| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 868310 | 166 (0.870) | 15 (0.090) | 7/148 | NT | 8.6% | coding (458/465 nt) | smpB | SsrA‑binding protein |
| ? | USA300TCH1516_ALE | = 868335 | 165 (0.940) | intergenic (+18/+1304) | smpB/USA300HOU_RS04240 | SsrA‑binding protein/hypothetical protein | |||||
ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAA < 2:2344704/91‑1ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAA < 2:2343723/91‑1 CTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAG < 1:3037245/91‑1 TTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC > 1:1722593/1‑91 TTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC > 1:1723316/1‑91 TTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGC > 1:2072181/1‑91 TGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC > 2:1432309/1‑91 TGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC > 1:3651943/1‑91 TGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCC > 1:3651840/1‑91 GGTGTTGCACGAGGTAAGAAAAAATATGATGAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC < 2:2322336/91‑1 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAATGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC < 1:3257448/91‑1 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCg > 2:3845180/1‑90 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC > 1:1130048/1‑91 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC < 1:1328509/91‑1 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC > 2:3181527/1‑91 GGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTGTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCC < 1:1327959/91‑1 GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG > 1:1097866/1‑91 GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG < 2:3783114/91‑1 AAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCG < 1:1666192/91‑1 AAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCG < 1:2918542/91‑1 AAATATGAGAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCAACTAAATCGC < 2:1479851/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTA < 1:1301220/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTA < 2:3160260/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTA < 2:3753371/91‑1 AATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTA < 2:1356562/91‑1 TGATAAAGGGCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAA < 2:3443913/91‑1 TGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAA < 1:62245/91‑1 gaaAAACGTCAAGATATGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAAC < 2:332377/88‑1 GATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAAC < 1:3572015/91‑1 GATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAAC < 1:1844866/91‑1 AACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGC < 1:804585/91‑1 AACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGC < 1:482315/91‑1 GTCAAGCTTTGCAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTT < 1:3516957/91‑1 GCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTT > 2:2698440/1‑91 GCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTT > 2:51826/1‑91 GCCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTT > 2:241165/1‑91 CCCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTT > 2:1500101/1‑91 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA < 2:773075/91‑1 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA < 2:2684883/91‑1 CCG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTA < 1:1142243/91‑1 CG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTAT > 1:895679/1‑91 CG‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTAT > 2:3403277/1‑91 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:3322540/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:3160248/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:2805600/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC > 1:2733445/1‑91 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:1649273/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:1440019/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:1189414/91‑1 G‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < 1:1106723/91‑1 ACTTGGTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/868215‑868310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccg‑‑ATTAAGCAACTAAATCGCTTAATAACGGGCTTTCATATCGCGCGCAACATCTCGTTTGACTGCTTTTTCTTTCAAAGCTTGACGTTTATC < USA300TCH1516_ALE/868335‑868246 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |