BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 868310	166 (0.870)	15 (0.090)	7/148	NT	8.6%	coding (458/465 nt)	smpB	SsrA‑binding protein
*	?	USA300TCH1516_ALE	= 868335	165 (0.940)	15 (0.090)	7/148	NT	8.6%	intergenic (+18/+1304)	smpB/USA300HOU_RS04240	SsrA‑binding protein/hypothetical protein

Only 100 of 240 total aligned reads displayed.

GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868220‑868400

gtgtTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCG                                                                                            <  2:3783114‑M1/91‑1 (MQ=255)

    tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                        <  2:3292204/91‑1 (MQ=255)

    tGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttat                                                                                        <  1:749098/91‑1 (MQ=255)

     gCACGAGGTAAGAAAAAATATGATAAACGCCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGACCGttatt                                                                                       >  2:3372638/1‑91 (MQ=255)

          aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                                  >  1:352174/1‑91 (MQ=255)

          aGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCg                                                                                  <  1:1428215/91‑1 (MQ=255)

           ggTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGa                                                                                 <  2:2138074/91‑1 (MQ=255)

            gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  1:3739778/91‑1 (MQ=255)

            gTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAt                                                                                <  2:496717/91‑1 (MQ=255)

              aaGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAttt                                                                              >  2:2637255/1‑91 (MQ=255)

              aaGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGAttt                                                                              >  2:1878413/1‑91 (MQ=255)

                gAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCACTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAg                                                                            >  2:3186699/1‑91 (MQ=255)

                 aaaaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcg                                                                           <  1:1666192‑M1/91‑18 (MQ=255)

                   aaaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGttattaagcaactaaatcg                                                                         <  1:2918542‑M1/91‑20 (MQ=255)

                    aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        <  2:519838/91‑1 (MQ=255)

                    aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGc                                                                        >  1:3848576/1‑91 (MQ=255)

                    aaaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTAAgcaac                                                                        <  1:1009199/91‑5 (MQ=255)

                     aaTATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgctta                                                                       <  2:1356562‑M1/91‑22 (MQ=255)

                       tatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTa                                                                     >  1:642150/1‑91 (MQ=255)

                       tatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTa                                                                     >  1:525526/1‑91 (MQ=255)

                       tatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTa                                                                     >  2:120100/1‑91 (MQ=255)

                       tatGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTa                                                                     <  2:1232730/91‑1 (MQ=255)

                        atGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTaa                                                                    >  2:968039/1‑91 (MQ=255)

                        atGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTaa                                                                    >  2:194167/1‑91 (MQ=255)

                         tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataa                                                                   <  1:62245‑M1/91‑26 (MQ=255)

                         tGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAAt                                                                   >  1:1337439/1‑91 (MQ=255)

                          gATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataac                                                                  <  1:1844866‑M1/91‑27 (MQ=255)

                          gATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATc                                                                  <  1:1440019‑M2/91‑2 (MQ=255)

                           aTAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcg                                                                 >  2:3403277‑M2/1‑89 (MQ=255)

                            tAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgg                                                                <  2:2684883‑M2/91‑4 (MQ=255)

                            tAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgg                                                                <  2:773075‑M2/91‑4 (MQ=255)

                              aaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataacgggc                                                              <  1:804585‑M1/91‑31 (MQ=255)

                              aaCGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATcgggc                                                              >  2:241165‑M2/1‑86 (MQ=255)

                                 gTCAAGCTTTGCAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGattaagcaactaaatcgcttaataacgggcttt                                                           <  1:3516957‑M1/91‑34 (MQ=255)

                                   cAAGCTTTGAAAGACAAAGCAGTTAAACGAGATGTTGCGCGCGTTATGAAAGCCGGTTATTAAGCGATTTAGTTGCTTAATCGTGCTatat                                                         <  2:3613473/91‑1 (MQ=255)

                                   cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         <  2:1501612/91‑1 (MQ=255)

                                   cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         >  2:90121/1‑91 (MQ=255)

                                   cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         <  2:1110585/91‑1 (MQ=255)

                                   cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         <  1:2687511/91‑1 (MQ=255)

                                   cAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTatat                                                         >  1:189339/1‑91 (MQ=255)

                                    aaGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATAtt                                                        >  1:924149/1‑91 (MQ=255)

                                     aGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATAttt                                                       >  2:1696332/1‑91 (MQ=255)

                                       cTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGa                                                     >  2:3721864/1‑91 (MQ=255)

                                         ttGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGata                                                   <  1:105677/91‑1 (MQ=255)

                                         ttGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGata                                                   <  1:474348/91‑1 (MQ=255)

                                          tGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGatat                                                  <  1:1782381/91‑1 (MQ=255)

                                             aagaaaAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGt                                               <  1:2333157/91‑1 (MQ=255)

                                                aaaaaGCAGTCAAACGAGCTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtat                                            >  1:332615/1‑91 (MQ=255)

                                                aaaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtat                                            >  1:2685610/1‑91 (MQ=255)

                                                aaaaaGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTtat                                            >  1:2955398/1‑91 (MQ=255)

                                                    agcagcCAAAAGGGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATAtgt                                        >  2:3765625/1‑91 (MQ=255)

                                                     gCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATAtgtg                                       >  2:1780818/1‑91 (MQ=255)

                                                     gCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTCGATATAGTTATAtgtg                                       >  2:3708549/1‑91 (MQ=255)

                                                       aGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCt                                     <  2:676614/91‑1 (MQ=255)

                                                        gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAGGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtt                                    <  2:3004961/91‑1 (MQ=255)

                                                        gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCtt                                    >  2:812045/1‑91 (MQ=255)

                                                        gTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATAGGGCTATATTTGATATAGTTATATGTGCtt                                    >  2:3583481/1‑91 (MQ=255)

                                                             aCGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTa                               >  2:2820646/1‑91 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATGTGTGCTTTTGTAAATTa                          >  2:544845/1‑91 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAATTTa                          <  2:35515/91‑1 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAATTTa                          <  2:1135725/91‑1 (MQ=255)

                                                                  aTGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTa                          >  2:739535/1‑91 (MQ=255)

                                                                     ttGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaa                       <  1:1758891/91‑1 (MQ=255)

                                                                     ttGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaa                       <  1:2307961/91‑1 (MQ=255)

                                                                      tGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaa                      >  2:2682621/1‑91 (MQ=255)

                                                                      tGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaa                      >  1:2063685/1‑91 (MQ=255)

                                                                       gcgcgcGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACaaaa                     >  2:1581231/1‑91 (MQ=255)

                                                                        cgcgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAATTTACAAAAg                    <  2:3439423/91‑1 (MQ=255)

                                                                         gcgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGt                   >  2:2246405/1‑91 (MQ=255)

                                                                         gcgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGt                   >  2:2380754/1‑91 (MQ=255)

                                                                         gcgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGt                   >  2:3198038/1‑91 (MQ=255)

                                                                          cgcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTa                  <  1:2509886/91‑1 (MQ=255)

                                                                           gcgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTAt                 >  2:3124360/1‑91 (MQ=255)

                                                                            cgATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATg                >  1:1241220/1‑91 (MQ=255)

                                                                              atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt              >  1:41563/1‑91 (MQ=255)

                                                                              atatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt              >  1:1923393/1‑91 (MQ=255)

                                                                              atatGAAAGCCCGTTATTAAGCGATTTAGTTGCCTAATCGGGCTATCTTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAt              >  2:718995/1‑91 (MQ=255)

                                                                               tatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtt             <  1:1618694/91‑1 (MQ=255)

                                                                               tatGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtt             <  1:1677012/91‑1 (MQ=255)

                                                                                atGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGCttt            >  1:3011586/1‑91 (MQ=255)

                                                                                atGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAttt            >  2:700376/1‑91 (MQ=255)

                                                                                atGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAttt            >  1:818550/1‑91 (MQ=255)

                                                                                  gAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgt          >  1:2746348/1‑91 (MQ=255)

                                                                                  gAAAGCCCGTTATTAAGCGATTTAGTTGATTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgt          >  1:3288980/1‑91 (MQ=255)

                                                                                   aaaGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgtt         >  2:649409/1‑91 (MQ=255)

                                                                                    aaGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgttt        <  1:3426511/91‑1 (MQ=255)

                                                                                    aaGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGAtttgttt        <  1:3541160/91‑1 (MQ=255)

                                                                                      gCCCGTTATTAAGCGATTTAGTTGCTTAATcgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtt      <  1:482315‑M2/91‑62 (MQ=255)

                                                                                       cccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttt     >  2:1500101‑M1/1‑4 (MQ=255)

                                                                                        ccGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgttta    <  1:1142243‑M1/91‑89 (MQ=255)

                                                                                        ccGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGAtt    <  2:1822484/91‑1 (MQ=255)

                                                                                         cGattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttat   >  1:895679‑M1/1‑2 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:3160248‑M1/91‑91 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:2805600‑M1/91‑91 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:1189414‑M1/91‑91 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:3322540‑M1/91‑91 (MQ=255)

                                                                                          gattaagcaactaaatcgcttaataacgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:1106723‑M1/91‑91 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTAATcgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcatatcttgacgtttttc  <  2:332377‑M2/91‑66 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTAATcgggctttcatatcgcgcgcaacatctcgtttgactgctttttctttcaaagcttgacgtttatc  <  1:3572015‑M2/91‑66 (MQ=255)

                                                                                          gTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATtta  <  2:84223/91‑1 (MQ=255)

GTGTTGCACGAGGTAAGAAAAAATATGATAAACGTCAAGCTTTGAAAGAAAAAGCAGTCAAACGAGATGTTGCGCGCGATATGAAAGCCCGTTATTAAGCGATTTAGTTGCTTAATCGGGCTATATTTGATATAGTTATATGTGCTTTTGTAAATTACAAAAGTATGATTTGTTTGATTTA  >  USA300TCH1516_ALE/868220‑868400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.