| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 891727 | 133 (0.700) | 15 (0.080) | 8/152 | NT | 8.7% | intergenic (+145/‑594) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1695091 | 190 (1.050) | intergenic (‑297/+233) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 | |||||
CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891634‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT < USA300TCH1516_ALE/1695091‑1695002 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 2:458410/1‑91CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 2:3048697/1‑91CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT < 2:2073846/91‑1 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT < 1:1175550/91‑1 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT > 1:2302724/1‑91 TAGGGAGTGAGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT < 1:3708909/91‑1 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC > 2:841335/1‑91 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC > 2:2991711/1‑91 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC < 2:2492103/91‑1 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:979852/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:1467914/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:1757198/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:3649189/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:3403728/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:2115221/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:2330264/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:1736045/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:3303370/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGCGAAT‑CCAATTTCT > 1:3878462/1‑91 GGGAGTGGGACATAAATGATATTTTAGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTTTGTAGAAATTGGGAAT‑CCAATTTCT > 2:1334017/1‑91 GGGAGTGGGACATAAATGACATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:3391804/1‑91 TGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTT < 2:1822705/91‑1 TGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTT < 2:1822618/91‑1 TCGTAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTGGG < 1:1045279/91‑1 AAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGATTC‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGAC < 1:1373527/91‑1 ATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGA < 1:1032747/91‑1 TTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGATTC‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAA < 1:2454910/91‑1 CATTGTCTCTAGAAATTGGGAAT‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTG > 1:957767/1‑91 GTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCC > 1:584688/1‑91 AGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCC > 1:73793/1‑91 GAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAGTATCATTTCTGTCCCACTCCCc > 1:3802609/1‑90 GAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTATGTCCCACTCCCT > 1:3631430/1‑91 GAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTCCGATAATATCATTTCTGTCCCACTCCCT > 1:1557687/1‑91 GAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTACGATAATATCATTTCTGTCCCACTCCCT > 1:1556132/1‑91 AATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCatc > 2:1566931/1‑88 AT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACAACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAG > 1:2799303/1‑91 TTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACT > 2:1859028/1‑91 TTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACT < 1:3863812/91‑1 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:481567/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC < 1:1701734/91‑1 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC < 2:3431221/91‑1 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 2:351114/1‑91 CTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCA < 1:366941/91‑1 CTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCA < 1:367232/91‑1 TACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT > 2:3877593/1‑91 TACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCATATGCATGAGTTTTACTCAT > 1:2736001/1‑91 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891634‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT < USA300TCH1516_ALE/1695091‑1695002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |