BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 891727	133 (0.700)	15 (0.080)	8/152	NT	8.7%	intergenic (+145/‑594)	USA300HOU_RS04385/rnmV_2	hypothetical protein/Ribonuclease M5
*	?	USA300TCH1516_ALE	= 1695091	190 (1.050)	15 (0.080)	8/152	NT	8.7%	intergenic (‑297/+233)	hemN_1/lepA	Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4

Only 100 of 251 total aligned reads displayed.

CATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG  >  USA300TCH1516_ALE/1695001‑1695181

cATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGt                                                                                            >  2:3197857/1‑91 (MQ=255)

cATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGt                                                                                            >  1:2841539/1‑91 (MQ=255)

 aTGAGTAAAACTCATGCATATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTa                                                                                           >  1:2736001‑M2/1‑90 (MQ=255)

   gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTaga                                                                                         >  1:481567‑M2/1‑88 (MQ=255)

   gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTaga                                                                                         <  2:3431221‑M2/91‑4 (MQ=255)

   gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTaga                                                                                         <  1:1701734‑M2/91‑4 (MQ=255)

   gAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTaga                                                                                         >  2:351114‑M2/1‑88 (MQ=255)

    aGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTagaa                                                                                        >  2:1859028‑M2/1‑87 (MQ=255)

     gTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt                                                                                       >  2:1375879/1‑91 (MQ=255)

     gTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAt                                                                                       <  2:466524/91‑1 (MQ=255)

      ttttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAtt                                                                                      >  2:803554/5‑91 (MQ=255)

      tAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAtt                                                                                      <  1:3416729/91‑1 (MQ=255)

       tttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAttt                                                                                     >  1:945121/4‑91 (MQ=255)

       tttaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAttt                                                                                     >  1:2940559/4‑91 (MQ=255)

       aaaaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAAttt                                                                                     >  1:2713905/1‑91 (MQ=255)

        aaaCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTc                                                                                    <  2:3261547/91‑1 (MQ=255)

         taCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt                                                                                   >  2:2098618/2‑91 (MQ=255)

         taCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt                                                                                   >  1:1028836/2‑91 (MQ=255)

         aaCTGATGCATAAGGGAGTGGGGCAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCt                                                                                   >  2:3679826/1‑91 (MQ=255)

          aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                                                  >  2:1800615/1‑91 (MQ=255)

          aCTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtt                                                                                  >  2:3024820/1‑91 (MQ=255)

           cTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTTGTCCCACCCCAACTTGCATTGTCTGTagaaattggat                                                                                 >  1:2799303‑M2/1‑80 (MQ=255)

            tCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCtttt                                                                                >  1:991019/1‑91 (MQ=255)

              aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg                                                                              <  2:2095177/91‑1 (MQ=255)

              aTGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCg                                                                              <  2:2093907/91‑1 (MQ=255)

                 cATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGaaa                                                                           >  2:2184794/1‑91 (MQ=255)

                     ggggaGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatttc                                                                       >  1:3802609‑M2/2‑70 (MQ=255)

                      gggAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTagaaattggattcccaatttct                                                                      >  1:73793‑M2/1‑69 (MQ=255)

                       tgAGGGGGGCAGAGATGATAGTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACGTGCATTGCCTGTAGAATTGCTGTTCGAAATTctct                                                                     <  2:3852893/90‑1 (MQ=14)

                          gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg                                                                  >  2:2262764/1‑91 (MQ=255)

                          gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg                                                                  <  2:3243052/91‑1 (MQ=255)

                          gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg                                                                  >  2:665531/1‑91 (MQ=255)

                          gTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATg                                                                  <  2:3636312/91‑1 (MQ=255)

                            gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGGATTTCTTTTCGAAATTCTCTATGtt                                                                <  2:2840801/91‑1 (MQ=255)

                            gggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGtt                                                                <  1:1110707/91‑1 (MQ=255)

                             ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCGCACCCCAACTTGCGTTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg                                                               <  1:3612864/91‑1 (MQ=255)

                             ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg                                                               >  2:616145/1‑91 (MQ=255)

                             ggACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTg                                                               <  1:3656687/91‑1 (MQ=255)

                              gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg                                                              <  1:2453456/91‑1 (MQ=255)

                              gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg                                                              >  1:2553380/1‑91 (MQ=255)

                              gACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgg                                                              <  2:277266/91‑1 (MQ=255)

                                cAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTgggg                                                            >  2:1120271/1‑91 (MQ=255)

                                  gAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGTATTTCTTTTCGAAATTCTCTATGTTggggtg                                                          <  1:221326/91‑3 (MQ=255)

                                  gAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGcc                                                          >  1:2460012/1‑91 (MQ=255)

                                   aaaTGATATTTTCGCAAGATGTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                                         <  2:121457/91‑1 (MQ=255)

                                   aaaTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccc                                                         <  2:71618/91‑1 (MQ=255)

                                      tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                                                      <  2:569975/91‑1 (MQ=255)

                                      tGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccac                                                      <  2:2399557/91‑1 (MQ=255)

                                       gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacc                                                     >  2:1268946/1‑91 (MQ=255)

                                       gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacc                                                     <  1:1041771/91‑1 (MQ=255)

                                       gATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacc                                                     >  2:2380695/1‑91 (MQ=255)

                                          atTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGccccacccca                                                  >  1:1356726/1‑91 (MQ=255)

                                            tttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAAc                                                >  2:1669452/1‑91 (MQ=255)

                                             ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                                               <  1:2092722/91‑1 (MQ=255)

                                             ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                                               <  1:2090291/91‑1 (MQ=255)

                                             ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACt                                               >  1:3112178/1‑91 (MQ=255)

                                              tCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACtt                                              >  2:3381653/1‑91 (MQ=255)

                                               cGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTg                                             <  2:3552919/91‑1 (MQ=255)

                                                    aaTTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACAt                                        >  1:3843437/1‑91 (MQ=255)

                                                      tttatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATta                                      <  2:814048/91‑1 (MQ=255)

                                                        tatttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATtata                                    >  2:3073381/1‑91 (MQ=255)

                                                         atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAACTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg                                   >  2:463744/1‑91 (MQ=255)

                                                         atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg                                   >  2:3303409/1‑91 (MQ=255)

                                                         atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg                                   >  1:200000/1‑91 (MQ=255)

                                                         atttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAg                                   >  1:829604/1‑91 (MQ=255)

                                                           ttCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTa                                 >  1:595790/1‑91 (MQ=255)

                                                            tcgtcgTCCCACCCCAACTTGCATTGTCTGTagaaattgggaatccaatttctacagacaatgcaagttggggtgggacgacgaaataaat                                <  1:1032747‑M2/91‑61 (MQ=255)

                                                             cgtcgtCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAg                               >  1:214949/1‑91 (MQ=255)

                                                              gtcgtcCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGc                              >  1:937396/1‑91 (MQ=255)

                                                                cgtcCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTg                            >  1:1901254/1‑91 (MQ=255)

                                                                cgtcCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTg                            <  2:2908159/91‑1 (MQ=255)

                                                                      aCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACtttt                      <  1:2381964/91‑1 (MQ=255)

                                                                      aCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACtttt                      <  2:2535570/91‑1 (MQ=255)

                                                                        cccAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCg                    <  1:1561572/91‑1 (MQ=255)

                                                                           aaCTTGCATTGTCTGTagaaattgggaatccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaaatatca                 <  2:1822618‑M2/91‑76 (MQ=255)

                                                                            aCTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAg                >  2:2256636/1‑91 (MQ=255)

                                                                              ttGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCt              <  1:1483311/91‑1 (MQ=255)

                                                                               tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCtt             >  2:863037/1‑91 (MQ=255)

                                                                               tGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCtt             >  2:2605434/1‑91 (MQ=255)

                                                                                gCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTc            >  2:1438332/1‑91 (MQ=255)

                                                                                 cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCt           <  1:1553531/91‑1 (MQ=255)

                                                                                 cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCt           <  2:926885/91‑1 (MQ=255)

                                                                                  aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtg          <  2:2939361/91‑1 (MQ=255)

                                                                                   ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt         >  1:1263610/1‑91 (MQ=255)

                                                                                   ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt         <  1:2314134/91‑1 (MQ=255)

                                                                                   ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt         <  2:2030468/91‑1 (MQ=255)

                                                                                   ttGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgt         >  1:3435218/1‑91 (MQ=255)

                                                                                    tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg        <  2:3723757/91‑1 (MQ=255)

                                                                                    tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg        <  1:32666/91‑1 (MQ=255)

                                                                                    tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg        <  1:3864399/91‑1 (MQ=255)

                                                                                    tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg        >  1:850199/1‑91 (MQ=255)

                                                                                    tGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCtgtg        <  1:1180154/91‑1 (MQ=255)

                                                                                      ccTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGtt      >  2:83646/1‑91 (MQ=255)

                                                                                       cTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCACCTTGCACACTCTAGTAAGCTGCCTCTTCGTCCGCTTCTGTGTTG     >  2:1323988‑M1/1‑91 (MQ=255)

                                                                                        tGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGG    <  1:2644125‑M1/91‑1 (MQ=255)

                                                                                         gTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGG   <  2:1518971‑M1/91‑1 (MQ=255)

                                                                                          tAGAATTTCTTTTCGCAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGAAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG  >  1:3314917‑M1/1‑91 (MQ=255)

                                                                                          tAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAg                >  1:3719401/1‑77 (MQ=255)

                                                                                          tAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG  <  1:3750428‑M1/91‑1 (MQ=255)

                                                                                          tAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG  <  1:1546454‑M1/91‑1 (MQ=255)

CATGAGTAAAACTCATGCATAAGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGG  >  USA300TCH1516_ALE/1695001‑1695181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.