| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 920377 = | 124 (0.650) | 14 (0.090) | 9/132 | NT | 11.7% | intergenic (+6/‑207) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 920443 = | 109 (0.700) | intergenic (+72/‑141) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG > USA300TCH1516_ALE/920443‑920532 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCT > 2:1026936/1‑91 TTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTT < 1:906652/91‑1 TTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTT < 2:848589/91‑1 TGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT < 1:3733843/91‑1 GATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTT > 1:1477555/1‑91 ATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTG < 1:3435581/91‑1 ATGTTTTCGTTTGATAAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCAATAAAATAATGTTTGGGGGTGCTTGTGCTTTTG > 1:3305090/1‑91 TGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGT < 1:445911/91‑1 GTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTG < 2:1063126/91‑1 GTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTG < 2:1064451/91‑1 TTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGG < 2:427734/91‑1 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTGAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGA < 2:1835056/91‑1 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGA > 2:557501/1‑91 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGA > 1:3132533/1‑91 TTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGA < 2:1834001/91‑1 TTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGAT < 1:1062474/91‑1 TTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGAT > 1:3579324/1‑91 TCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATT < 1:1573099/91‑1 TCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATT > 2:1198972/1‑91 TCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATT > 2:3572368/1‑91 GTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGC < 2:2483009/91‑1 GTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACC > 1:2632107/1‑91 TCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAA > 1:2746879/1‑91 CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAA > 2:1564194/1‑91 CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAA > 1:3071318/1‑91 CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAA > 2:1564079/1‑91 CAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACAT > 2:2790746/1‑91 AAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATC > 2:2584614/1‑91 AAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCA > 2:3569501/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 2:3646668/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 2:3646744/1‑91 AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAA > 1:3147540/1‑91 ATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGC > 1:1740585/1‑91 GCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGAa > 2:3859513/1‑90 GCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGAT > 1:2062603/1‑91 TTTTGTGGATTTCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATC > 2:1534304/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA < 1:284359/91‑1 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:1634398/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:2717885/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:1508309/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 2:70330/1‑91 TTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCA > 1:114951/1‑91 TTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAA < 2:993300/91‑1 TTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAA < 1:2045860/91‑1 TGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAA < 1:3262120/91‑1 TGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAA > 1:14178/1‑91 TGTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAA < 1:1551342/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCGAGCAAAAACATCAAAC > 2:3701418/1‑91 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:891641/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:3741826/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC < 1:3414682/91‑1 GTGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAAC > 1:2905967/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:2969553/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:1761059/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:2965394/1‑91 TGGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACT > 1:1113539/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA > 1:3742376/1‑91 GGATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTA < 1:3851197/91‑1 GATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAA < 1:1130839/91‑1 ATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAA < 2:2632107/91‑1 ATTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAA < 1:1917877/91‑1 TTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAG < 2:2907283/91‑1 TTGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAG < 1:70172/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 1:2275881/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 1:2276081/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGT < 1:1363726/91‑1 TGCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATCTTAATCAAGCAAAAACATCAAACTAAAGT > 1:3113554/1‑91 GCGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTT < 1:1221337/91‑1 CGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTC > 1:2607353/1‑91 CGTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTC < 2:1248969/91‑1 GTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG < 1:2584614/91‑1 CTTGATGTTTTCGTTTGATTAAATTGGTAAAATAGAAACGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/920480‑920377‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtggattgcgTTTCTATTTTACCAATTTAATCAAACGAAAACATCAAGCTGAAGATCGCCGAAAGATTTTAATCAAGCAAAAACATCAAACTAAAGTTCG > USA300TCH1516_ALE/920443‑920532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |