| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 920377 = | 124 (0.650) | 14 (0.090) | 9/132 | NT | 11.7% | intergenic (+6/‑207) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein |
| ? | USA300TCH1516_ALE | 920443 = | 109 (0.700) | intergenic (+72/‑141) | USA300HOU_RS04555/USA300HOU_RS04565 | Putative monooxygenase/hypothetical protein | |||||
Only 100 of 262 total aligned reads displayed.
CCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAA > USA300TCH1516_ALE/920287‑920467 | cgaactttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaac < 1:2584614‑M1/1‑1 (MQ=255)cccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACC > 2:2465814‑M1/1‑91 (MQ=255)cccGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACC < 1:1229730‑M1/91‑1 (MQ=255) cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGC > 2:1585848‑M1/1‑91 (MQ=255) cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGC > 1:560302‑M1/1‑91 (MQ=255) cgcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGC < 1:2155000‑M1/91‑1 (MQ=255) gcgACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCA > 2:3099526‑M1/1‑91 (MQ=255) actttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCa < 1:1363726‑M1/4‑1 (MQ=255) actttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCa < 1:2276081‑M1/4‑1 (MQ=255) tttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAAt < 2:2632107‑M1/6‑1 (MQ=255) gACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAAT > 1:1610460‑M1/1‑91 (MQ=255) ttagtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATc < 1:1130839‑M1/7‑1 (MQ=255) cTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCC > 1:1936423‑M1/1‑91 (MQ=255) tAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCA > 2:1155443‑M1/1‑91 (MQ=255) agtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCca > 1:1113539‑M1/83‑91 (MQ=255) gtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCcac < 1:3741826‑M1/10‑1 (MQ=255) gtttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCcac < 1:3414682‑M1/10‑1 (MQ=255) aGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCAC > 1:956949‑M1/1‑91 (MQ=255) tttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCcaca > 1:14178‑M1/81‑91 (MQ=255) ttgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACaa < 1:2045860‑M1/12‑1 (MQ=255) tgatgtttttgcttgattaaaatctttcggcgatcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACaaa > 2:70330‑M1/79‑91 (MQ=255) acaacGCATCCCGCCAACA‑CATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaag < 2:2186109/91‑1 (MQ=255) caacGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaag < 2:3619775/91‑1 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAGTCATGCAATATAAATAATCGACCGCAATCCACAAaagcac < 2:3186072/91‑1 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcac > 2:1050964/1‑91 (MQ=255) cGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcac > 1:3210172/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 1:2267987/1‑91 (MQ=255) cATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaa > 2:1477555/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc < 2:486465/91‑1 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc > 2:1363726/1‑91 (MQ=255) tCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcacaagc > 2:3565594/1‑91 (MQ=255) cGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCAcc > 2:2841873/1‑91 (MQ=255) aaCACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCa > 1:1150471/1‑91 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCaa < 2:2159027/91‑1 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCaa < 1:131842/91‑1 (MQ=255) acacCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATACACAAAAGCACAAGCACCCCCaa < 2:344434/91‑1 (MQ=255) acCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACACGCACCCCCAAAc < 1:2969965/91‑1 (MQ=255) atcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACatt > 2:2738040/1‑91 (MQ=255) atcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACatt < 1:2641888/91‑1 (MQ=255) tcatGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAaagcaca < 1:521370/74‑1 (MQ=255) ttcttcagcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGc > 2:3859513‑M1/47‑91 (MQ=255) atatAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGc < 1:1456049/91‑1 (MQ=255) atatAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGc < 1:2723593/91‑1 (MQ=255) ataATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCtt < 2:2106071/91‑1 (MQ=255) taATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTg > 1:2907283/1‑91 (MQ=255) aatcaatcGAATTAAGCAAATCATGACATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGc < 2:3367603/91‑1 (MQ=255) aatcaatcAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGc > 1:3582229/1‑91 (MQ=255) atcaatcaAATTAATCAAATCATGCAATATAGATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGcc > 1:619658/1‑91 (MQ=255) atcaatcaAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgt < 1:660962‑M1/91‑37 (MQ=255) gcttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAt > 1:1740585‑M1/40‑91 (MQ=255) caatcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAt > 2:1917877/1‑91 (MQ=255) ttgatgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCAttt > 2:3646744‑M1/38‑91 (MQ=255) tcaaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttt < 2:1533913‑M1/91‑42 (MQ=255) tCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttt > 1:1665645‑M2/1‑88 (MQ=255) caaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgctttt < 1:2064685‑M1/91‑43 (MQ=255) caaATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgctttt < 1:3099526‑M1/91‑43 (MQ=255) cAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATtttt > 1:1982795‑M2/1‑87 (MQ=255) cAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATtttt > 1:1557278‑M2/1‑87 (MQ=255) atgttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTtg > 2:2790746‑M1/35‑91 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgt < 2:1542463‑M1/91‑45 (MQ=255) aaTTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgt > 1:2465814‑M2/1‑85 (MQ=255) ttttcgtttgattaaattggtaaaatagaaaCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTgg > 2:1564079‑M1/32‑91 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 2:972009‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 1:755332‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 1:2062700‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggat < 1:2955944‑M2/91‑11 (MQ=255) aatcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTAATTTAGTGCTTGCCATttttgtggat < 2:526132‑M2/91‑11 (MQ=255) atcaaatcaTGCAATATAAATAATCGACCGCTATCCACAAAAGCACAAGCACCCCCAAACATTATTTCAGTGCTTGCCAGttttgtggatt < 2:2969191‑M2/91‑12 (MQ=255) atcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggatt > 2:65449‑M2/1‑80 (MQ=255) tcaaatcaTGCAATATAAATAATCGACCGCAATCCACAAaagcacaagca < 2:2020225/50‑1 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcg < 2:1341442‑M2/91‑15 (MQ=255) aaatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATttttgtggattgcg > 2:2417226‑M2/1‑77 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt > 1:1075288/1‑91 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt < 2:1331371/91‑1 (MQ=255) aatcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGt < 1:2883105/91‑1 (MQ=255) atcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt > 2:799502/1‑91 (MQ=255) atcaTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGtt < 1:1191576/91‑1 (MQ=255) caTGTAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTc < 1:3233639/91‑1 (MQ=255) caTGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTc < 2:1641994/91‑1 (MQ=255) tGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTa > 1:2431035/1‑91 (MQ=255) gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAt > 2:2406107/1‑91 (MQ=255) gCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTAt > 1:3136419/1‑91 (MQ=255) cAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGAATGCGTTTCTAtt < 1:2992989/91‑1 (MQ=255) aaTATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTATAttt > 2:3143855/1‑91 (MQ=255) tataAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTa > 2:2689536/1‑91 (MQ=255) taaataaTCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTAcc < 2:1235171/91‑1 (MQ=255) aataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCaa < 2:2806545/91‑1 (MQ=255) aataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATGTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCaa > 1:3867426/1‑91 (MQ=255) ataatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAt < 1:3801990/91‑1 (MQ=255) taatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAtt < 1:1826255/91‑1 (MQ=255) aatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAttt > 1:3207484/1‑91 (MQ=255) aatCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAAttt < 1:63317/91‑1 (MQ=255) atCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTa > 1:925114/1‑91 (MQ=255) tCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTaa > 2:3491286/1‑91 (MQ=255) gACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATc < 2:3296154/91‑1 (MQ=255) aCCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCa > 2:859163/1‑91 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCaa > 1:3629724/1‑91 (MQ=255) ccGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAACTTAATCaa > 2:832951/1‑91 (MQ=255) cGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgattt < 2:2798146‑M1/91‑78 (MQ=255) cGCAATCCACAAAAatggcaagcactaaaataatgtttgggggtgcttgtgcttttgtggattgcggtcgattatttatattgcatgattt > 2:178826‑M1/1‑14 (MQ=255) | CCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAGCACAAGCACCCCCAAACATTATTTTAGTGCTTGCCATTTTTGTGGATTGCGTTTCTATTTTACCAATTTAATCAAA > USA300TCH1516_ALE/920287‑920467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |