| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1036446 = | 211 (1.110) | 14 (0.090) | 6/138 | NT | 7.7% | intergenic (+376/‑968) | USA300TCH1516_00963/USA300TCH1516_00964 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1036485 = | 152 (0.930) | intergenic (+415/‑929) | USA300TCH1516_00963/USA300TCH1516_00964 | hypothetical protein/hypothetical protein | |||||
CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1036546‑1036446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACAT > USA300TCH1516_ALE/1036485‑1036574 CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAA > 1:3740112/1‑91CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAA > 2:3148433/1‑91CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAA > 1:915749/1‑91CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAA > 2:1433104/1‑91 ATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAA > 2:3876639/1‑91 ATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAA > 2:1223590/1‑91 ATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAA > 2:2069988/1‑91 TGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAAT > 2:3616944/1‑91 TGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAAT > 2:3616919/1‑91 TGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAAT > 2:1333476/1‑91 TGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAAT > 1:2927474/1‑91 GCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATG > 1:1334637/1‑91 CAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGA > 1:3222318/1‑91 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:2185448/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 1:701216/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:2185052/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:2185449/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:2450788/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:527360/91‑1 AGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGAT < 2:567956/91‑1 GGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATG < 1:24335/91‑1 GGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATG < 1:2085768/91‑1 GGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATG < 1:597714/91‑1 ctgCATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGG > 1:3389328/4‑91 GAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGG > 1:1542264/1‑91 GAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGG > 1:1543607/1‑91 GAACATGTAGCCTAACGAGCCCGTTTTAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGG < 2:3363661/91‑1 AACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGT < 1:2870339/91‑1 AACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGT < 1:2869820/91‑1 AACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGT < 1:3749762/91‑1 AACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGT < 1:2241968/91‑1 ACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTT > 2:966347/1‑91 ACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTT < 2:415922/91‑1 ACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTT < 2:3106519/91‑1 ACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTT > 1:3382336/1‑91 ACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTT < 2:3106552/91‑1 CATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA < 2:1384083/91‑1 CATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA < 1:63925/91‑1 CATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA < 1:63785/91‑1 CATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA < 1:3701535/91‑1 TGTCGCCTATTGAGCCCGTTAAAAAGACGGTGACTAAATGCGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGA > 2:3189450/1‑83 TGTCGCCTATTGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGA < 1:3189450/83‑1 GTGACTAAATGAGATTTTCTTTAACCATCATTCGTTGTCAAAGTTTGGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTA > 2:1200659/1‑91 ACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA < 2:3402683/57‑1 ACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA > 1:3402683/1‑57 TTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGG > 1:272477/1‑91 TTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCG > 1:3517342/1‑91 TTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCG > 1:3678206/1‑91 TTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCG > 1:3680944/1‑91 TTAACCATCATTCTATGTCAAAGTTTTGAAACGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACAT > 2:2961856/1‑91 TCATTCTATGTCAAAGTTTTGAAATGATGTTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTG > 2:3382218/1‑91 TCATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTG > 2:2592665/1‑91 CATTCTATGTCACAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGC > 1:2988263/1‑91 CATTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGC > 1:2082111/1‑91 TTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCT > 2:883853/1‑87 TTCTATGTCAAAGTTTTGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCT < 1:883853/87‑1 tTGTCAAAGTTTGGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACA > 1:3047057/2‑76 tTGTCAAAGTTTGGAAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACA < 2:3047057/75‑1 AATGATGGTTAAAGAAAATCTTATTTAGTTACCGTTTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTT < 2:123911/91‑1 AATGAGGGTTAAAGAAAATCTCATTTAGTCTCCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTT < 2:124031/91‑1 tTGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTA < 2:3857898/90‑1 ATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTA < 2:3101693/91‑1 ATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTA < 1:1594448/91‑1 ATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAG > 1:2359734/1‑91 ATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAG > 1:2359539/1‑91 TGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGT < 1:816252/91‑1 GGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTA > 1:539650/1‑91 GGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTA > 1:539437/1‑91 GGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTA > 1:3619410/1‑91 GGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTA > 1:1670666/1‑91 GGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAAAGGGCTCATTAGGCTACATGTTCCTGCACGTCGTCTTTTTACATTTTTATAGTA > 1:3616586/1‑91 GTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAA < 2:1856129/91‑1 GTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAA < 2:1855824/91‑1 GTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAA < 1:3792495/91‑1 GTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAA < 2:1268823/91‑1 TTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAAC < 1:3690369/91‑1 TTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAAC < 1:2961856/91‑1 TTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACACTTTTATAGTAAC < 2:1847385/91‑1 TAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACA > 1:2850288/1‑91 TAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACA < 2:667214/91‑1 AAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTATGCGACATGTTCCTGCATGTCGTATTTTTACATTTTTATAGTAACAT < 1:3074546/91‑1 AAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACAT < 1:1850139/91‑1 CATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAGACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTTGAAATGATGGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1036546‑1036446‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACAT > USA300TCH1516_ALE/1036485‑1036574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |