BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1036446 =	211 (1.110)	14 (0.090)	6/138	NT	7.7%	intergenic (+376/‑968)	USA300TCH1516_00963/USA300TCH1516_00964	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1036485 =	152 (0.930)	14 (0.090)	6/138	NT	7.7%	intergenic (+415/‑929)	USA300TCH1516_00963/USA300TCH1516_00964	hypothetical protein/hypothetical protein

Only 100 of 276 total aligned reads displayed.

GTCACTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACATA  >  USA300TCH1516_ALE/1036395‑1036575

gTCACTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTaa                                                                                            <  1:2197715/91‑1 (MQ=255)

gTCACTTTCATTCGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCTAAACTTTGACATAGAATGATGGTTaa                                                                                            <  2:3221808/91‑1 (MQ=255)

 tCACTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTaaa                                                                                           <  2:2724325/91‑1 (MQ=255)

 tCACTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTaaa                                                                                           <  2:1380799/91‑1 (MQ=255)

   aCTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGa                                                                                         >  1:1157444/1‑91 (MQ=255)

    cgcctaatgagcccgttaaaaagacggtgactaaatgagattttcttTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGaa                                                                                        >  1:3678206‑M1/48‑91 (MQ=255)

    cgcctaatgagcccgttaaaaagacggtgactaaatgagattttcttTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGaa                                                                                        >  1:3680944‑M1/48‑91 (MQ=255)

    cTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGaa                                                                                        <  2:754245/91‑1 (MQ=255)

    cTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGaa                                                                                        <  1:1709234/91‑1 (MQ=255)

            ggTATAGTAGTAGCAATAATAACTTTAAGCAATAAAAAATAACCATCATCTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCAt                                                                                <  2:2948488/91‑1 (MQ=255)

              tataGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCAttt                                                                              <  1:2640208/91‑1 (MQ=255)

              tataGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCAttt                                                                              >  1:1835029/1‑91 (MQ=255)

              tataGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCAttt                                                                              >  2:812762/1‑91 (MQ=255)

                 agtagtagCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGt                                                                           >  1:3285774/1‑91 (MQ=255)

                  gtagtagCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                                          <  2:3566951/91‑1 (MQ=255)

                  gtagtagCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTc                                                                          <  2:1192536/91‑1 (MQ=255)

                    agtagCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCAc                                                                        >  1:765963/1‑91 (MQ=255)

                      tagCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCg                                                                      >  2:3166441/1‑91 (MQ=255)

                       agCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGt                                                                     >  1:3616919/1‑91 (MQ=255)

                        gCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTc                                                                    >  1:548012/1‑91 (MQ=255)

                        gCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTc                                                                    <  2:884559/91‑1 (MQ=255)

                          aattatAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtt                                                                  <  2:2107408/91‑1 (MQ=255)

                           ataataAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttt                                                                 <  1:2578549/91‑1 (MQ=255)

                           ataataAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttt                                                                 <  1:1488818/91‑1 (MQ=255)

                            taataaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCtttt                                                                >  1:1272374/1‑91 (MQ=255)

                             aataaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCttttt                                                               <  2:1806842/91‑1 (MQ=255)

                              gtgactaaatgagattttctttaaccatcattcgttgtcaaagtttggaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTa                                                              >  2:1200659‑M2/61‑91 (MQ=255)

                              ataaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTa                                                              >  1:2300906/1‑91 (MQ=255)

                              ataaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTa                                                              >  2:3416696/1‑91 (MQ=255)

                               taaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTaa                                                             <  2:299144/91‑1 (MQ=255)

                               taaATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTaa                                                             <  1:2505595/91‑1 (MQ=255)

                                aaaTTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAAc                                                            <  2:142044/91‑1 (MQ=255)

                                aaaTTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAAc                                                            <  2:334088/91‑1 (MQ=255)

                                 aaTTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACg                                                           >  2:1513334/1‑91 (MQ=255)

                                   tttAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACggg                                                         >  1:3690048/1‑91 (MQ=255)

                                   tttAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACggg                                                         >  1:3494548/1‑91 (MQ=255)

                                   tttAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACggg                                                         <  1:3354123/91‑1 (MQ=255)

                                   tttAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACggg                                                         >  1:2397232/1‑91 (MQ=255)

                                    ttAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGc                                                        <  1:3472933/91‑1 (MQ=255)

                                     tAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCt                                                       <  1:1617358/91‑1 (MQ=255)

                                     tAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCt                                                       <  1:2256703/91‑1 (MQ=255)

                                       aGCAATAAAAAATAACCATCATTTCTAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                                     <  1:3599867/91‑1 (MQ=255)

                                       aGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCa                                                     <  1:2532722/91‑1 (MQ=255)

                                          aaTAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTa                                                  >  1:1419264/1‑91 (MQ=255)

                                          aaTAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTAATTTAGTCACCGTCTTTTTAACGGGCTCATTa                                                  >  2:2626762/1‑91 (MQ=255)

                                            ttttctttaaccatcattctatgtcaaagttttgaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAgg                                                >  1:272477‑M2/47‑91 (MQ=255)

                                            tAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAgg                                                <  1:921373/91‑1 (MQ=255)

                                             aaaaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGc                                               >  2:2675611/1‑91 (MQ=255)

                                             aaaaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTCAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGc                                               >  2:2989600/1‑91 (MQ=255)

                                              aaaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCg                                              <  1:419824/91‑1 (MQ=255)

                                              aaaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCg                                              <  2:3645239/91‑1 (MQ=255)

                                              aaaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCg                                              >  1:2947306/1‑91 (MQ=255)

                                               aaaaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGa                                             >  1:691671/1‑91 (MQ=255)

                                                 aaTAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGTTCATTAGGCGACa                                           >  2:1779653/1‑91 (MQ=255)

                                                   TAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATg                                         <  1:3701535‑M1/91‑1 (MQ=255)

                                                   TAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATg                                         <  1:63925‑M1/91‑1 (MQ=255)

                                                    AACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGt                                        <  2:3106519‑M1/91‑1 (MQ=255)

                                                     ACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGtt                                       <  1:2870339‑M1/91‑1 (MQ=255)

                                                      CCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGAcatgcag                                      >  1:3389328‑M1/1‑88 (MQ=255)

                                                      CCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTc                                      >  1:1543607‑M1/1‑91 (MQ=255)

                                                        ATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCt                                    <  2:2185448‑M1/91‑1 (MQ=255)

                                                        ATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCt                                    <  2:2450788‑M1/91‑1 (MQ=255)

                                                        ATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCt                                    <  2:527360‑M1/91‑1 (MQ=255)

                                                         tcattctatgtcaaagttttgaaatgatgtttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTg                                   >  2:3382218‑M2/34‑91 (MQ=255)

                                                         TCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa                                           <  1:3189450‑M1/83‑1 (MQ=255)

                                                          cattctatgtcaaagttttgaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGc                                  >  1:2082111‑M2/33‑91 (MQ=255)

                                                           ATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCa                                 >  2:1333476‑M1/1‑91 (MQ=255)

                                                            ttctatgtcaaagttttgaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACATGTTCCt                                    <  1:883853‑M2/57‑1 (MQ=255)

                                                            TTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCAt                                >  2:3876639‑M1/1‑91 (MQ=255)

                                                            TTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCAt                                >  2:2069988‑M1/1‑91 (MQ=255)

                                                             TTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATg                               >  2:3148433‑M1/1‑91 (MQ=255)

                                                               cAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATgtt                             >  1:1082502/1‑90 (MQ=255)

                                                               cAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATgtc                             >  1:916269/1‑91 (MQ=255)

                                                               cAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATgtc                             >  2:3796076/1‑91 (MQ=255)

                                                                ttgtcaaagtttggaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa                                           <  2:3047057‑M2/50‑1 (MQ=255)

                                                                ttgtcaaagtttggaaatgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCAATAGGCGACa                                           >  1:3047057‑M2/27‑76 (MQ=255)

                                                                 aaaCTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATgtcgt                           <  1:323111/91‑1 (MQ=255)

                                                                   aCTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCt                         >  1:1244326/1‑91 (MQ=255)

                                                                      ttGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCtttt                      <  1:1977885/91‑1 (MQ=255)

                                                                       tGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCttttt                     <  2:3749762/91‑1 (MQ=255)

                                                                         aCATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAAc                                                            >  2:157371/1‑50 (MQ=255)

                                                                         aCATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTAc                   <  1:2009749/91‑1 (MQ=255)

                                                                          cATAGTTTGATGTTTAAAGAAAATCTCATTTAGTCTCCTTTTTTTTAACGGGTTCATTAGGCGACATGTTCCTGCATGTCTTCTTTTTACa                  <  2:1082502/91‑1 (MQ=14)

                                                                           aTAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAt                 <  2:2555954/91‑1 (MQ=255)

                                                                           aTAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAt                 <  2:72038/91‑1 (MQ=255)

                                                                           aTAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAt                 <  1:798359/91‑1 (MQ=255)

                                                                             aGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAttt               <  2:2295379/91‑1 (MQ=255)

                                                                              gAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAtttt              <  1:1024419/91‑1 (MQ=255)

                                                                               aatgagggttaAAGAAAATCTCATTTAGTCTCCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACAttttt             <  2:124031‑M2/80‑1 (MQ=255)

                                                                                atgatggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTta            <  1:1594448‑M2/81‑1 (MQ=255)

                                                                                   atggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAg         >  1:2359734‑M2/8‑91 (MQ=255)

                                                                                     ggttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTa       >  1:539437‑M2/6‑91 (MQ=255)

                                                                                      gttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTaa      <  1:3792495‑M2/87‑1 (MQ=255)

                                                                                      gttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTaa      <  2:1856129‑M2/87‑1 (MQ=255)

                                                                                       ttaAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAAc     <  1:2961856‑M2/88‑1 (MQ=255)

                                                                                        taAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACa    >  1:2850288‑M2/3‑91 (MQ=255)

                                                                                        taAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACa    <  2:667214‑M2/89‑1 (MQ=255)

                                                                                          aaGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACata  <  2:1322893/91‑1 (MQ=255)

                                                                                          aaGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACata  <  2:1323793/91‑1 (MQ=255)

                                                                                          aaGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACata  <  2:1628805/91‑1 (MQ=255)

GTCACTTTCATTGGTATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCAAAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTAGTCACCGTCTTTTTAACGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTATAGTAACATA  >  USA300TCH1516_ALE/1036395‑1036575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.