| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 218 (1.140) | 18 (0.110) | 12/132 | NT | 9.6% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 160 (1.020) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT > USA300TCH1516_ALE/1040412‑1040499 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAT > 1:2090283/1‑91 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT > 2:3463506/1‑91 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 2:3427176/91‑1 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG < 2:113446/91‑1 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG > 1:239511/1‑91 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG < 1:2388997/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:655951/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:3738038/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:1532132/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 2:2326811/91‑1 tctGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC > 2:1858845/4‑91 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 2:1444126/91‑1 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 2:1444252/91‑1 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 2:1614056/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 2:3634551/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 2:1146272/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT < 1:2414685/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT > 2:1326398/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:875934/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:798660/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT < 1:516558/91‑1 tTTTTCCGTTGTTACTTTCATAACTTCGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 2:2215508/2‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 2:1766882/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 2:3820964/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 1:1483353/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAGTGATTGGCTct > 2:2215545/1‑89 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA > 1:371042/1‑91 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA < 2:1142225/91‑1 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA < 2:1142200/91‑1 AGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG > 1:1715501/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 2:2192094/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 1:598684/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 2:3116193/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAA > 2:1417811/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAA > 1:2899801/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAA > 1:976161/1‑91 AATCAAACGGAGTGTTGAAGTCAACATTTCACATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAA > 1:2150719/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 2:728339/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 2:728286/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAA > 1:656153/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAA > 2:2602250/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:3683015/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAC < 2:240438/81‑1 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAC > 1:240438/1‑81 GGAGTGTTGAAGTCAACA‑TTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATA > 1:2772893/1‑91 AGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATAT > 1:3507083/1‑91 TTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATA > 2:2428971/1‑91 CCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATT > 1:388535/1‑91 cTTGATTGGCTTTCATACTGTGTTACTAAGTTATTAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATAAGATTAGT > 2:302685/2‑91 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAAT > 1:1511806/1‑91 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAAT < 2:3738639/91‑1 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAAT > 1:2597561/1‑91 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATA < 1:1579413/91‑1 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATA > 2:3845334/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAA > 1:2488992/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAA > 1:2300921/1‑91 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAAT > 2:1690762/1‑91 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAAT > 1:1037634/1‑91 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGC > 1:1366977/1‑41 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGC < 2:1366977/41‑1 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT > 1:391571/1‑91 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT < 1:1861582/91‑1 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT > 1:2345162/1‑91 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT < 1:2686194/91‑1 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGT > 1:391109/1‑91 TTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTA < 2:2414685/91‑1 TTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTA > 1:3577966/1‑91 TTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAA < 1:2109933/91‑1 TTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAA < 2:3501355/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT > 2:2387258/1‑91 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT < 1:3209597/91‑1 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAT > USA300TCH1516_ALE/1040412‑1040499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |