| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 218 (1.140) | 18 (0.110) | 12/132 | NT | 9.6% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 160 (1.020) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 260 total aligned reads displayed.
AAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > USA300TCH1516_ALE/1040322‑1040502 | tAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtg < 1:2918487/91‑1 (MQ=255) tAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtg > 1:3142330/1‑91 (MQ=255) tAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTAGACTTCAACACTCCGTTTGATTGGCTTTTATACtg < 1:1333649/91‑1 (MQ=255) aGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgt < 2:1103279/91‑1 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt > 1:2643047/1‑91 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt < 2:589998/91‑1 (MQ=255) cTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTAc < 1:41450/91‑1 (MQ=255) cTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTAc > 1:3474177/1‑91 (MQ=255) cTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTAc < 2:2742161/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 1:1134413/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 2:3120837/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGCTTGATTGGCTTTTATACTGTGTTACt < 1:2878354/91‑1 (MQ=255) aTGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTa < 1:622914/91‑1 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa < 2:1175471/91‑1 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa < 1:178021/91‑1 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt > 2:3281279/1‑91 (MQ=255) gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGtt > 1:3738639/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa < 2:1166689/91‑1 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 2:3753695/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa < 1:1251184/91‑1 (MQ=255) ccAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGaa < 2:2132067/91‑1 (MQ=255) cAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGC‑TTTATACTGTGTTACTAAGTTATGAAAg < 2:228973/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt > 1:2243874/1‑91 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:3005626/91‑1 (MQ=255) aGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaa > 2:2710109/1‑91 (MQ=255) aGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaa > 2:2683531/1‑91 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 2:480295/91‑1 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 1:884080/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 1:1644243/91‑1 (MQ=255) tAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaacaa > 2:1363640/1‑91 (MQ=255) aaaaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaacaac > 1:385961/1‑91 (MQ=255) aaaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACg > 1:2857107/1‑91 (MQ=255) aaaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACg > 2:1123441/1‑91 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 1:2941464/1‑91 (MQ=255) aTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGc < 2:3717938/91‑1 (MQ=255) aTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGc < 2:1214679/91‑1 (MQ=255) ttAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCa < 1:3465645/91‑1 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCaa < 2:1142225‑M1/91‑1 (MQ=255) TAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCaa > 1:371042‑M1/1‑91 (MQ=255) AAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc > 2:1766882‑M1/1‑91 (MQ=255) AAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc > 1:1483353‑M1/1‑91 (MQ=255) agccaatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTg > 1:1715501‑M2/52‑91 (MQ=255) AGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTg < 2:3634551‑M1/91‑1 (MQ=255) gccaatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑a > 2:2192094‑M2/51‑91 (MQ=255) GCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑a < 2:1614056‑M1/91‑1 (MQ=255) GCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑a < 2:1444126‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aa < 1:1532132‑M1/91‑1 (MQ=255) caatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaa > 1:976161‑M2/49‑91 (MQ=255) CAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaa < 1:2388997‑M1/91‑1 (MQ=255) atcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaaa > 2:728339‑M2/47‑91 (MQ=255) caaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaaaaa > 2:2602250‑M2/45‑91 (MQ=255) aaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc < 2:240438‑M2/38‑1 (MQ=255) aaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAAc > 1:240438‑M2/44‑81 (MQ=255) aaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAg > 1:3683015‑M2/44‑91 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAg > 2:3463506‑M1/1‑91 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAg < 2:3427176‑M1/91‑1 (MQ=255) ATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGc > 1:2090283‑M1/1‑91 (MQ=255) gggAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCaa > 1:2450689/1‑91 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑aaaa > 2:2366569/1‑82 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAata > 2:2942646/1‑91 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAatat < 2:2329489/91‑1 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAatat > 1:2036510/1‑91 (MQ=255) aaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAAtata < 2:2011977/91‑1 (MQ=255) aTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataa > 1:1895399/1‑91 (MQ=255) ttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataata > 2:2428971‑M2/34‑91 (MQ=255) gTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataata < 2:1269109/91‑1 (MQ=255) gTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataata < 1:200546/91‑1 (MQ=255) gTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataata < 1:351128/91‑1 (MQ=255) ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataataa < 1:3200657/91‑1 (MQ=255) ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataataa > 1:3546168/1‑91 (MQ=255) tGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATataataat > 2:1481197/1‑91 (MQ=255) aCTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAatat < 1:1802865/91‑1 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATTATTATAtt < 1:554968/91‑1 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt > 1:2594507/1‑91 (MQ=255) cTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt < 1:1596784/91‑1 (MQ=255) cTTCAACACGCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATAtt > 1:1949058/1‑91 (MQ=255) cAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTaa < 1:2540628/91‑1 (MQ=255) cAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTaa > 2:2476086/1‑91 (MQ=255) cacTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATAc < 1:2318521/91‑1 (MQ=255) ccTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACg < 1:2761663/90‑1 (MQ=255) acTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACg < 1:3803766/91‑1 (MQ=255) acTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACg < 1:337866/91‑1 (MQ=255) cTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGa > 2:2617582/1‑91 (MQ=255) cTCCGTTAGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAAAAAAAAAA‑AAAAAAAGCAATATAATAATATTTAATACGa < 2:1934897/91‑1 (MQ=255) tCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGAt < 1:178586/91‑1 (MQ=255) cGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTa < 2:2231969/91‑1 (MQ=255) gTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAAGCAATATAATAATATTTAATACGATTa < 1:2478314/91‑1 (MQ=255) gTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAg > 1:1389235/1‑91 (MQ=255) gTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAg < 2:1939316/91‑1 (MQ=255) gTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAg > 1:694412/1‑91 (MQ=255) tttGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGt > 2:2811123/1‑91 (MQ=255) tttGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGt < 1:2742645/91‑1 (MQ=255) cttgattggctttcaTACTGTGTTACTAAGTTATTAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATAAGATTAGt > 2:302685‑M2/16‑91 (MQ=255) attggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGtaata > 2:3845334‑M2/12‑91 (MQ=255) ttggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGtaataa > 1:2488992‑M2/11‑91 (MQ=255) ggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAAt > 1:1037634‑M2/9‑91 (MQ=255) cttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGt > 1:2345162‑M2/7‑91 (MQ=255) cttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGt > 1:391109‑M2/7‑91 (MQ=255) ttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTa > 1:3577966‑M2/6‑91 (MQ=255) tttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTaa < 1:2109933‑M2/87‑1 (MQ=255) | AAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTG‑AAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > USA300TCH1516_ALE/1040322‑1040502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |