| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1046453 | 164 (0.860) | 16 (0.090) | 12/144 | NT | 9.2% | coding (361/939 nt) | menA | 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase |
| ? | USA300TCH1516_ALE | = 1046472 | 167 (0.980) | coding (342/939 nt) | menA | 1,4‑dihydroxy‑2‑naphthoate octaprenyltransferase | |||||
GGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1046356‑1046453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcagcAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAGG < USA300TCH1516_ALE/1046472‑1046383 GGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATATGTAACCAACAGCCCTACATACTAATCCTACTGGTAATAACCAAAATGCAGAGT > 1:3613947/1‑91 GCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTT < 2:2921222/91‑1 GCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTT > 1:609659/1‑91 GCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTT > 2:25695/1‑91 CGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTA < 1:3844746/91‑1 CGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTA > 2:14803/1‑91 GTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAG > 2:3459200/1‑91 CCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCA > 2:1495473/1‑91 CATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAG > 1:2251764/1‑91 CATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAG > 1:2251366/1‑91 CATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAG > 2:1045784/1‑91 TGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCA < 2:2971870/91‑1 AAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTT < 2:511567/91‑1 GGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGT < 2:3671883/91‑1 GGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGT < 2:3671967/91‑1 GGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGT < 2:3672685/91‑1 GGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTT < 2:1089181/91‑1 GCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTT > 2:408708/1‑91 CACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTT < 1:67235/91‑1 ACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTA < 1:3156923/91‑1 CCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAG < 2:2282794/91‑1 CCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAG < 2:2283018/91‑1 CTGTATATAGGTAACCAACAGCCATACATACTAGGCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGC < 1:272119/91‑1 TGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGCT < 2:1112400/91‑1 TGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGCT < 2:1112431/91‑1 GTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGCTG < 2:317320/91‑1 ATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGCTGCTAA < 2:2165926/91‑1 AACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTC < 1:408708/91‑1 TTAGTAGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTAT > 2:409653/1‑91 TTAGCAGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTAT > 2:409492/1‑91 TAGCAGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATA > 2:3487843/1‑91 AGCAGCAATGTTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATAT < 1:3712362/91‑1 GCAGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATA < 2:3458019/91‑1 AGCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACA > 2:1871336/1‑91 GCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAG < 2:2834789/91‑1 GCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAG < 2:2834162/91‑1 GCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAG > 2:1242667/1‑91 GCAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAG < 2:1208691/91‑1 CAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAGG < 2:3528145/91‑1 GGCGTCCATGAAATAGGGAAAGGGCCACCTGTATATAGGTAACCAACAGCCATACATACTAATCCAACTGGTAATAACCAAAATGAAGAGTTAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1046356‑1046453‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagcagcAATATTAGGTTTGTTTTTAGCTGCTAACTCTTCATTTTGGTTATTACCAGTTGGATTAGTATGTATGGCTGTTGGTTACCTATATACAGG < USA300TCH1516_ALE/1046472‑1046383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |