| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1061336 = | 181 (0.950) | 12 (0.070) | 6/144 | NT | 7.4% | coding (601/3771 nt) | atl_1 | Bifunctional autolysin |
| ? | USA300TCH1516_ALE | 1061375 = | 136 (0.790) | coding (562/3771 nt) | atl_1 | Bifunctional autolysin | |||||
AACGCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1061433‑1061336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttcagTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTAA > USA300TCH1516_ALE/1061375‑1061464 AACGCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGC > 2:2284912/1‑91AACGCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGC < 2:421376/91‑1 CGCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGC > 2:419017/1‑91 GCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCT < 1:630738/91‑1 CAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTT > 1:3173754/1‑91 CAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTT > 1:313498/1‑91 AATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTC > 1:2657267/1‑91 AATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTC > 1:3111009/1‑91 ATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCA < 2:2169155/91‑1 TATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAG > 1:1299748/1‑91 CAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGT > 2:1102138/1‑91 AAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTT > 1:380454/1‑91 AAGCGCCACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTCTTATATTG > 1:446919/1‑91 AAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTG > 2:3868077/1‑91 AAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTG > 2:147094/1‑91 AAGCGACACCTAAAGTAACTACTTTTAGCGCATCAGTTTTAACTTTAGGTGCTGATGTAGTTGCAGCACTAGGTGCTGCAGTTTTATATTG > 2:2953874/1‑91 AGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGC > 2:298208/1‑91 AGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGC > 1:3781573/1‑91 AGCGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGC > 2:1117064/1‑91 CGACACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGT > 1:818289/1‑91 CACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTC > 2:1906295/1‑91 CACCTAAAGTAACTACTTTTAGCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTC > 1:2378126/1‑91 CGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCT < 2:1063357/91‑1 GCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTG > 2:2364742/1‑91 GCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTG > 1:1521320/1‑91 GCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTG < 2:782207/91‑1 CTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGA > 2:859927/1‑91 CAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTT > 1:1352282/1‑91 CAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTT > 1:31380/1‑91 CAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTT > 1:2110293/1‑91 CAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTT < 1:2108696/91‑1 CAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGATTTTATATTGCGTTTCAAGAGCTGCAGGTATAGCAGCTGATTT > 1:3881685/1‑91 AGTTTTAGCTTTAGGTGCTGATGTAGTTGTAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTA < 1:3117292/91‑1 AGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTA > 2:1665394/1‑91 AGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTA < 1:742212/91‑1 AGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTA < 1:3199349/91‑1 GTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTAA < 2:3022876/91‑1 GTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTAA > 1:2633987/1‑91 AACGCAATATAAAACCGCAGCACCTAAAGCTGCAACTACATCAGCACCTAAAGCTAAAACTGAAGCGACACCTAAAGTAACTACTTTTAGCGCTTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1061433‑1061336‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttcagTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATATTGCGTTTCAAGAGCTGCAGGTTTAGCAGCTGATTTAA > USA300TCH1516_ALE/1061375‑1061464 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |