BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1061336 =	181 (0.950)	12 (0.070)	6/144	NT	7.4%	coding (601/3771 nt)	atl_1	Bifunctional autolysin
*	?	USA300TCH1516_ALE	1061375 =	136 (0.790)	12 (0.070)	6/144	NT	7.4%	coding (562/3771 nt)	atl_1	Bifunctional autolysin

Only 100 of 228 total aligned reads displayed.

TACGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATA  >  USA300TCH1516_ALE/1061246‑1061426

ttaaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaac                                                                                            >  1:2633987‑M1/91‑91 (MQ=255)

ttaaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaac                                                                                            <  2:3022876‑M1/1‑1 (MQ=255)

tACGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGc                                                                                            <  2:2610930/91‑1 (MQ=255)

tACGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGc                                                                                            >  1:2009055/1‑91 (MQ=255)

 taaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCt                                                                                           <  1:742212‑M1/2‑1 (MQ=255)

 taaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCt                                                                                           <  1:3199349‑M1/2‑1 (MQ=255)

 taaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctacaactacatcagcacctaaagctaaaaCt                                                                                           <  1:3117292‑M1/2‑1 (MQ=255)

 aCGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCt                                                                                           >  1:3040557/1‑91 (MQ=255)

  cGAATGTAATCGTTAATTGAAGAGTTTACTTGTTGTTTATATTTTGGCAAACTCGTTTTAGGTGTTGCAGCAACTGATCTTGGTTGTGCTg                                                                                          <  1:3446247/91‑1 (MQ=255)

  cGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTg                                                                                          <  2:1702864/91‑1 (MQ=255)

  aaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTg                                                                                          <  1:2108696‑M1/3‑1 (MQ=255)

  aaatcagctgctaaacctgcagctcttgaaacgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTg                                                                                          >  1:2110293‑M1/89‑91 (MQ=255)

    aaTGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGaa                                                                                        <  2:3456602/91‑1 (MQ=255)

    aaTGTAATCGTTAATTGAAGAGTTCACCTGTTGTTCATGTTTTGGCTAACTCGTTTTTGGTGCTGCAGACACTGGTCTTGGTTGTGCGGaa                                                                                        <  2:368967/91‑1 (MQ=255)

     aTGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAg                                                                                       <  1:229178/91‑1 (MQ=255)

       gTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAgcg                                                                                     <  1:2221889/91‑1 (MQ=255)

       gTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAgcg                                                                                     <  2:458607/91‑1 (MQ=255)

        tAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAgcgc                                                                                    <  1:154613/91‑1 (MQ=255)

          aTCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTa                                                                                  >  1:1740934/1‑91 (MQ=255)

          aTCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTa                                                                                  >  2:1309717/1‑91 (MQ=255)

            cGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTaaa                                                                                >  2:2078051/1‑91 (MQ=255)

              ttAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAag                                                                              >  1:3355815/1‑91 (MQ=255)

               tAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAagt                                                                             <  1:1373322/91‑1 (MQ=255)

                 aTTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAagtag                                                                           >  1:1445157/1‑91 (MQ=255)

                   tGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGtt                                                                         >  2:2652917/1‑91 (MQ=255)

                       gagTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACtt                                                                     >  1:318180/1‑91 (MQ=255)

                        agTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACttt                                                                    <  1:306745/91‑1 (MQ=255)

                          tttACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAg                                                                  >  1:13887/1‑91 (MQ=255)

                           ttACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAgg                                                                 <  2:1270092/91‑1 (MQ=255)

                            tACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGgt                                                                >  2:894270/1‑91 (MQ=255)

                              cTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGgtgt                                                              <  2:2075020/91‑1 (MQ=255)

                              cTTGTGGTTTATATTTTGGCAAACTCGTTCTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGgtgt                                                              >  2:3382042/1‑91 (MQ=255)

                              cTTGTGGTTTATATTGTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGAGCTGAAGCGCTAAAAGTAGTTACTTTAGgtgt                                                              >  1:3313400/1‑91 (MQ=255)

                                tgtgGTTTATATTTTGGCAAACACGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCg                                                            >  2:2574426/1‑91 (MQ=255)

                                acgcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCg                                                            >  1:818289‑M1/59‑91 (MQ=255)

                                  gcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCt                                                          >  2:1117064‑M1/57‑91 (MQ=255)

                                  gcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCt                                                          >  2:298208‑M1/57‑91 (MQ=255)

                                  gcaatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCt                                                          >  1:3781573‑M1/57‑91 (MQ=255)

                                   ggTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCtt                                                         >  1:237973/1‑91 (MQ=255)

                                   ggTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCtt                                                         <  1:2934225/91‑1 (MQ=255)

                                   caatataagaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGGCGCtt                                                         >  1:446919‑M1/56‑91 (MQ=255)

                                   caatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCtt                                                         >  2:147094‑M1/56‑91 (MQ=255)

                                   caatataaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCtt                                                         >  2:3868077‑M1/56‑91 (MQ=255)

                                    gTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTc                                                        <  2:82328/91‑1 (MQ=255)

                                    gTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTc                                                        <  2:2201045/91‑1 (MQ=255)

                                    gTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTc                                                        <  1:894270/91‑1 (MQ=255)

                                      ttATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAg                                                      <  1:2701432/91‑1 (MQ=255)

                                      ttATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAg                                                      <  1:2746236/91‑1 (MQ=255)

                                       tataTTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGt                                                     <  2:201905/91‑1 (MQ=255)

                                         tatTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGttt                                                   >  1:3272618/1‑91 (MQ=255)

                                         aaaaccgcagcacctaaagctgcaactacatcagcacctaaagctaaaaCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGttt                                                   >  1:380454‑M1/50‑91 (MQ=255)

                                           ttttGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTa                                                 <  2:786858/91‑1 (MQ=255)

                                            tttGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAg                                                >  2:3549065/1‑91 (MQ=255)

                                             ttGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGc                                               >  2:188189/1‑91 (MQ=255)

                                               ggCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGGTTCAGTTTTAGCtt                                             <  2:3297056/91‑1 (MQ=255)

                                               ggCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCtt                                             <  2:708583/91‑1 (MQ=255)

                                               ggCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCtt                                             <  2:1928684/91‑1 (MQ=255)

                                                gCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCttt                                            >  1:250239/1‑91 (MQ=255)

                                                  aaaCTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAg                                          >  2:3173754/1‑91 (MQ=255)

                                                   aaCTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAgg                                         >  2:3117972/1‑91 (MQ=255)

                                                    aCTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGt                                        >  2:2657267/1‑91 (MQ=255)

                                                     cTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCACTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTg                                       <  2:1982615/91‑1 (MQ=255)

                                                       cGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCt                                     <  2:2408587/91‑1 (MQ=255)

                                                       cGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCt                                     <  2:832185/91‑1 (MQ=255)

                                                        gTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTg                                    <  2:679410/91‑1 (MQ=255)

                                                        gTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTg                                    >  2:2326305/1‑91 (MQ=255)

                                                        gTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTg                                    <  1:351092/91‑1 (MQ=255)

                                                          ttttGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGAt                                  >  1:2811699/1‑91 (MQ=255)

                                                          ttttGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGAt                                  >  2:2401672/1‑91 (MQ=255)

                                                           tttGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATg                                 >  2:154864/1‑91 (MQ=255)

                                                           tttGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATg                                 >  2:1002869/1‑91 (MQ=255)

                                                            ttGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGt                                >  1:3639696/1‑91 (MQ=255)

                                                              ggTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAg                              <  2:1432569/91‑1 (MQ=255)

                                                               gtgtTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGt                             >  2:742212/1‑91 (MQ=255)

                                                                tgtTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGtt                            <  1:1959108/91‑1 (MQ=255)

                                                                 gtTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTg                           >  2:2288612/1‑91 (MQ=255)

                                                                 gtTGCAGCAACTGATCTTGGTTGTGCTGAAGAGCTAAAAGTCGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTg                           >  2:2950897/1‑91 (MQ=255)

                                                                 gtTGCAGCAACTGATCGTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTg                           <  2:3712255/91‑1 (MQ=255)

                                                                    gcagcaACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAg                        <  2:2432322/91‑1 (MQ=255)

                                                                        caACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCttt                    >  1:2694007/1‑91 (MQ=255)

                                                                        caACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCttt                    >  1:2694534/1‑91 (MQ=255)

                                                                          aCTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAg                  >  2:640127/1‑91 (MQ=255)

                                                                          aCTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAg                  <  1:1678204/91‑1 (MQ=255)

                                                                          aCTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAg                  <  1:3406246/91‑1 (MQ=255)

                                                                          aCTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAg                  >  1:3833995/1‑91 (MQ=255)

                                                                           cTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAgg                 >  2:279194/1‑91 (MQ=255)

                                                                           cTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAgg                 <  2:726693/91‑1 (MQ=255)

                                                                             gATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtg               <  2:3410489/91‑1 (MQ=255)

                                                                              aTCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgc              >  1:188107/1‑91 (MQ=255)

                                                                              aTCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgc              <  2:2743314/91‑1 (MQ=255)

                                                                              aTCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgc              <  1:2441189/91‑1 (MQ=255)

                                                                              aTCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCNTTAGGTGCTGATGTAGTNGNAGCNTTAGGtgc              >  1:648707/1‑91 (MQ=255)

                                                                              aTCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTCTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgc              >  2:3083115/1‑91 (MQ=255)

                                                                               tCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgct             >  2:2889720/1‑91 (MQ=255)

                                                                                 ttGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGtgctgc           >  2:2374501/1‑91 (MQ=255)

                                                                                    gTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGt        <  2:3469898/91‑1 (MQ=255)

                                                                                    gTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGt        <  1:940248/91‑1 (MQ=255)

                                                                                       gtgCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGtttt     >  1:1173506/1‑91 (MQ=255)

                                                                                       gtgCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGtttt     <  2:2360008/91‑1 (MQ=255)

                                                                                          CTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTtata  >  1:1299748‑M1/1‑91 (MQ=255)

TACGAATGTAATCGTTAATTGAAGAGTTTACTTGTGGTTTATATTTTGGCAAACTCGTTTTTGGTGTTGCAGCAACTGATCTTGGTTGTGCTGAAGCGCTAAAAGTAGTTACTTTAGGTGTCGCTTCAGTTTTAGCTTTAGGTGCTGATGTAGTTGCAGCTTTAGGTGCTGCGGTTTTATA  >  USA300TCH1516_ALE/1061246‑1061426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.