| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1084754 = | 154 (0.810) | 17 (0.100) | 13/140 | NT | 11.5% | intergenic (+126/+139) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | 1084817 = | 126 (0.760) | intergenic (+189/+76) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1084853‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGA > USA300TCH1516_ALE/1084817‑1084905 ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 2:554701/91‑1ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGC < 2:2081013/91‑1ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACACGTTGTGGCGC > 2:1618111/1‑91 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAACGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC > 1:3357584/1‑91 TTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC < 2:436678/91‑1 TGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCT < 2:1611197/91‑1 GTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC > 1:3034775/1‑91 GTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC > 1:669391/1‑91 GTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC < 2:378557/91‑1 GTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC > 1:1173571/1‑91 TATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCT < 2:3276574/91‑1 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 2:1621005/91‑1 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 2:1620975/91‑1 ATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 2:1620769/91‑1 TAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTT < 1:1528608/91‑1 AAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACAGGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT > 2:3411563/1‑91 AACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATG > 1:99055/1‑91 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTCTTGTTTAGTATGGAATAAATGGTTTTCTTTTTC > 2:739201/1‑91 GAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAC > 2:1506594/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAA > 1:2397391/1‑91 TGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATG > 2:1406959/1‑91 CCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAA > 1:2348056/1‑91 CAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTT > 1:391859/1‑91 AACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCT > 1:1802722/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 2:1346866/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 2:3355458/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 2:2368348/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 1:3502600/1‑91 ACATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTA > 1:917745/1‑91 CATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAA > 2:337900/1‑91 ATGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAT > 1:737913/1‑91 TGTTATTTTGTTCATCCAAACATGTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATT > 1:219505/1‑91 GTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTT > 2:1938117/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC > 2:3841258/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC > 1:587882/1‑91 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC < 2:1538694/91‑1 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAC < 2:363072/91‑1 CCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTAACTATACAATGATGGATAAAATTTAAC < 2:1538100/91‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACC < 2:1528608/91‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACC < 2:2886627/91‑1 CTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACC < 1:2191111/91‑1 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTA < 1:2349284/91‑1 CTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTA > 2:16287/1‑91 TTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTAC < 1:3547021/91‑1 TTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTAC < 1:3086340/91‑1 TTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACAC > 2:3177580/1‑91 TTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACAC > 2:2985184/1‑91 TGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACG < 1:2601925/91‑1 GTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGA > 1:3123245/1‑91 ATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1084853‑1084754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGA > USA300TCH1516_ALE/1084817‑1084905 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |