BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1084754 =	154 (0.810)	17 (0.100)	13/140	NT	11.5%	intergenic (+126/+139)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC
*	?	USA300TCH1516_ALE	1084817 =	126 (0.760)	17 (0.100)	13/140	NT	11.5%	intergenic (+189/+76)	purD/ykoC_1	Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC

Only 100 of 209 total aligned reads displayed.

CCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACC  >  USA300TCH1516_ALE/1084727‑1084907

ccAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGtt                                                                                            >  1:3316667/1‑91 (MQ=255)

ccAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGtt                                                                                            >  1:2687982/1‑91 (MQ=255)

 cAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGttt                                                                                           <  2:325116/91‑1 (MQ=255)

   aaTTTGTGATTAAGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg                                                                                         >  1:2977590/1‑91 (MQ=255)

    aTTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGt                                                                                        <  1:706940/91‑1 (MQ=255)

     tttGTGATTATGCATATGTAATAGAAAAGAGGCGCCACAACATGTTTGGATGAACAAAACAACATGTTTGTGGCACCTCTTTTGTTTAGTa                                                                                       <  2:2963412/91‑1 (MQ=255)

     tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa                                                                                       >  2:1695917/1‑91 (MQ=255)

      ttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTAt                                                                                      >  2:391886/1‑91 (MQ=255)

         tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                                                                                   >  2:1312334/1‑91 (MQ=255)

         tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                                                                                   <  1:1896379/91‑1 (MQ=255)

         tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                                                                                   >  2:547245/1‑91 (MQ=255)

           aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                                                                                 >  1:3590387/1‑91 (MQ=255)

               tGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAAt                                                                             <  1:942411/91‑1 (MQ=255)

                gCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATg                                                                            <  1:3625441/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  2:1131682/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  2:2694369/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  1:526491/91‑1 (MQ=255)

                  atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                                                                          <  2:3783482/91‑1 (MQ=255)

                   tatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                                                                         >  1:2419888/1‑91 (MQ=255)

                   catactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                                                                         >  1:99055‑M1/9‑91 (MQ=255)

                    atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt                                                                        >  1:103019/1‑91 (MQ=255)

                    atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt                                                                        >  1:3465733/1‑91 (MQ=255)

                    atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt                                                                        >  2:119230/1‑91 (MQ=255)

                      gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc                                                                      <  1:648526/91‑1 (MQ=255)

                          tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt                                                                  <  1:15333/91‑1 (MQ=255)

                          tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt                                                                  >  2:3695371/1‑91 (MQ=255)

                          tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt                                                                  <  1:3635262/91‑1 (MQ=255)

                           ACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACCTGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt                                                                 >  2:3411563‑M1/1‑91 (MQ=255)

                            caaaagaggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctctcttgtTTAGTATGGAATAAATGGttttctttttc                                                                >  2:739201‑M2/63‑91 (MQ=255)

                               AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat                                                             <  2:1621005‑M1/91‑1 (MQ=255)

                               AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat                                                             <  2:1620769‑M1/91‑1 (MQ=255)

                                 gaggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc                                                           >  2:1506594‑M2/58‑91 (MQ=255)

                                 GAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc                                                           <  2:378557‑M1/91‑1 (MQ=255)

                                 GAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc                                                           >  1:1173571‑M1/1‑91 (MQ=255)

                                  AGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACa                                                          <  2:1611197‑M1/91‑1 (MQ=255)

                                   GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCGTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa                                                         >  1:3357584‑M1/1‑91 (MQ=255)

                                    GCGCCACAACGTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt                                                        >  2:1618111‑M1/1‑91 (MQ=255)

                                    GCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAt                                                        <  2:2081013‑M1/91‑1 (MQ=255)

                                     cgcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATg                                                       <  2:3051228/91‑1 (MQ=255)

                                      gcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGa                                                      >  1:2605136/1‑91 (MQ=255)

                                      gcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGa                                                      >  1:1595239/1‑91 (MQ=255)

                                      gcCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGa                                                      >  2:1552448/1‑91 (MQ=255)

                                       ccACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGaa                                                     <  1:2476008/91‑1 (MQ=255)

                                        cacaACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAt                                                    <  2:532579/91‑1 (MQ=255)

                                         acaacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAtt                                                   <  1:1110703/91‑1 (MQ=255)

                                         acaacaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAAtt                                                   <  2:2710804/91‑1 (MQ=255)

                                            acaTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCt                                                >  1:2581244/1‑91 (MQ=255)

                                            aacatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCt                                                >  1:1802722‑M2/47‑91 (MQ=255)

                                             caTGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTTTATATTTAATTTCTa                                               >  2:651488/1‑91 (MQ=255)

                                             acatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               >  2:2368348‑M2/46‑91 (MQ=255)

                                             acatgttattttgttcatccaaacatgttgtggcgcctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTa                                               >  2:1346866‑M2/46‑91 (MQ=255)

                                               tGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAt                                             <  2:3361067/91‑1 (MQ=255)

                                               tGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAt                                             <  1:3500205/91‑1 (MQ=255)

                                               atgttattttgttcatccaaacatgttgtggcacctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAt                                             >  1:737913‑M2/44‑91 (MQ=255)

                                                gTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAtt                                            <  1:2318403/91‑1 (MQ=255)

                                                gTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAtt                                            >  1:2886627/1‑91 (MQ=255)

                                                gTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAAtt                                            <  1:329399/91‑1 (MQ=255)

                                                   tGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAg                                         <  2:1255516/91‑1 (MQ=255)

                                                     gATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTa                                       <  2:612707/91‑1 (MQ=255)

                                                      aTGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTAt                                      <  1:109040/91‑1 (MQ=255)

                                                      aTGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTAt                                      <  1:3528909/91‑1 (MQ=255)

                                                       tGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATc                                     <  2:2581244/91‑1 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTCGTATCta                                   >  1:1931361/1‑91 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  1:2797091/91‑1 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   >  2:1832192/1‑91 (MQ=255)

                                                         aaCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCta                                   <  1:3850635/91‑1 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  <  2:1434821/91‑1 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  >  2:1891216/1‑91 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  >  1:1218354/1‑91 (MQ=255)

                                                          aCAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtat                                  <  1:1729516/91‑1 (MQ=255)

                                                           cAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCtata                                 <  1:2548487/91‑1 (MQ=255)

                                                            aaaaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATAc                                <  2:431756/91‑1 (MQ=255)

                                                              aaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACaa                              >  1:439873/1‑91 (MQ=255)

                                                              aaTAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACaa                              >  1:3537773/1‑91 (MQ=255)

                                                                 aaCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTa                           >  2:1955114/1‑91 (MQ=255)

                                                                  aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTAt                          <  2:2839290/91‑1 (MQ=255)

                                                                  aCATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTAt                          >  2:3008792/1‑91 (MQ=255)

                                                                     tGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGa                       >  2:622043/1‑91 (MQ=255)

                                                                      gTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGAt                      <  1:3670066/91‑1 (MQ=255)

                                                                       tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa                     <  2:2862851/91‑1 (MQ=255)

                                                                       tttGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATa                     <  2:1291155/91‑1 (MQ=255)

                                                                           tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt                 <  1:32070/91‑1 (MQ=255)

                                                                           tgGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAt                 <  2:848923/91‑1 (MQ=255)

                                                                            ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt                >  2:2890054/1‑91 (MQ=255)

                                                                            ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt                <  2:1598910/91‑1 (MQ=255)

                                                                            ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt                <  2:2389573/91‑1 (MQ=255)

                                                                            ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt                >  2:1055278/1‑91 (MQ=255)

                                                                            ggCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAtt                >  2:3657014/1‑91 (MQ=255)

                                                                             gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt               >  1:3544379/1‑91 (MQ=255)

                                                                             gCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAAttt               >  1:3756863/1‑91 (MQ=255)

                                                                              cACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTa              >  2:3334123/1‑91 (MQ=255)

                                                                              cACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTa              >  2:2860989/1‑91 (MQ=255)

                                                                                cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAc            <  2:363072‑M2/81‑1 (MQ=255)

                                                                                cctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTAACTATACAATGATGGATAAAATTTAAc            <  2:1538100‑M2/81‑1 (MQ=255)

                                                                                 ctcttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAAcc           <  1:2191111‑M2/82‑1 (MQ=255)

                                                                                   cttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTa         <  1:2349284‑M2/84‑1 (MQ=255)

                                                                                    ttttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTac        <  1:3086340‑M2/85‑1 (MQ=255)

                                                                                      ttgtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTacac      >  2:3177580‑M2/5‑91 (MQ=255)

                                                                                        gtTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGa    >  1:3123245‑M2/3‑91 (MQ=255)

                                                                                          ttAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGAcc  <  2:2630855/91‑1 (MQ=255)

CCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAATGAATTTCTAATTTAGTATCTATACAATTATGGATAAAATTTAACCTACACGACC  >  USA300TCH1516_ALE/1084727‑1084907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.