| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1084763 | 151 (0.790) | 12 (0.070) | 9/140 | NT | 8.5% | intergenic (+135/+130) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
| ? | USA300TCH1516_ALE | = 1084806 | 126 (0.760) | intergenic (+178/+87) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC | |||||
TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084664‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC < USA300TCH1516_ALE/1084806‑1084717 TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTTGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATA > 2:3655619/1‑91TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTTGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATA > 2:3655569/1‑91TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATA > 1:213935/1‑91 CTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAt > 2:2792301/1‑90 CTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATAC < 2:3310273/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA > 1:2859916/1‑91 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 1:2101213/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA < 1:1477210/91‑1 TATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACA > 1:2839290/1‑91 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 1:3534416/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 2:2749415/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA < 1:2791588/91‑1 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA > 2:3249255/1‑91 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAA > 1:1434821/1‑91 ATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTCTGATTATGCATATGTAATACAA > 2:3130372/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 1:325116/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 1:2445991/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 1:2224537/1‑91 TAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAA > 2:3086340/1‑91 AACGATAGATTTTTTCATAGCTTTTTTAGTTCTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGAGATTATGCATACGTAATACAAAA > 2:2963623/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:71288/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:612707/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:3783494/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG > 1:3783482/1‑91 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG < 2:520767/91‑1 ACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAG < 2:520801/91‑1 CGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 2:2349284/1‑91 CGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 1:1081225/1‑91 CGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 1:161996/1‑91 CGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGA > 1:1080393/1‑91 GATAGATTTTTTCATAGTTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAG > 2:329399/1‑91 GATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAG > 1:2089856/1‑91 GATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAG > 1:1841483/1‑91 GATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAG < 2:3421470/91‑1 GATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAG > 1:2710804/1‑91 ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG < 1:2816155/91‑1 TTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAA < 2:3416738/91‑1 GTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATGCAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAAC < 1:3367708/91‑1 GTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAAC < 1:338415/91‑1 TAGGACATTGATTGCTGTACCAAATTTGTGATTATGCATAGGTAATACAAAAGAGGCGCCACAAACATGTTATTTTGTTCATCCAAACATG < 1:1916466/91‑1 GACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTG < 1:433494/91‑1 ATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGG < 1:3465513/91‑1 TTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGC < 1:440974/91‑1 TTGATTTCTGTACCAAATTTGTGATTATGCAAATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGC < 2:957442/91‑1 ATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCC < 2:984867/91‑1 TTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTC < 2:1658482/91‑1 CTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 1:806922/91‑1 CTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTT < 2:3878851/91‑1 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGT < 2:25473/91‑1 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGT < 2:27374/91‑1 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGT > 2:2119963/1‑91 ACAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATATTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGT < 1:3089930/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:1599373/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA > 2:675065/1‑91 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:3754961/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:2618009/91‑1 CAAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTA < 1:1598910/91‑1 AAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTAC > 2:2003638/1‑91 AAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTAC < 1:2053246/91‑1 AAAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTAC < 2:2571094/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 1:3267213/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 1:108429/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 1:111357/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA < 2:3499210/91‑1 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA > 1:2286148/1‑91 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA > 1:941730/1‑91 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA > 1:941976/1‑91 AAAGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACA > 1:943092/1‑91 AGAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGA > 2:1459148/1‑91 GAGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAA < 1:967595/91‑1 AGGTGCCACAAACGTGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 1:3872315/91‑1 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 2:539151/91‑1 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA > 1:220959/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 1:1142395/91‑1 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 2:2856196/91‑1 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA > 2:3798118/1‑91 AGGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAA < 1:377894/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:827097/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT < 1:335199/91‑1 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:827143/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:3403392/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:134038/1‑91 GGTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAAT > 2:2132016/1‑91 GTGCCACAATCATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC < 2:2005314/91‑1 TCTATAACGATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1084664‑1084763‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaagaggTGCCACAAACATGTTATTTTGTTCATCCAAACATGTTGTGGCGCCTCTTTTGTATTACATATGCATAATCACAAATTTGGTACAGAAATC < USA300TCH1516_ALE/1084806‑1084717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |