New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 1084763 | 151 (0.790) | 12 (0.070) | 9/140 | NT | 8.5% | intergenic (+135/+130) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
? | USA300TCH1516_ALE | = 1084806 | 126 (0.760) | intergenic (+178/+87) | purD/ykoC_1 | Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC |
Only 100 of 290 total aligned reads displayed.
ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT > USA300TCH1516_ALE/1084673‑1084853 | gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg < 2:1538694‑M1/10‑1 (MQ=255) gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg > 2:3841258‑M1/82‑91 (MQ=255) gATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGgcgc > 1:1297857/1‑91 (MQ=255) aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc > 1:864784/1‑91 (MQ=255) aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc < 2:2916734/91‑1 (MQ=255) aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc > 1:1351238/1‑91 (MQ=255) tttttGATAGCTTTTTTAGTTGTAGCGTCTAGGACATTGATTTCTGTACCAAAGTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac < 1:3611563/91‑1 (MQ=255) tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac < 2:2445991/91‑1 (MQ=255) tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac > 2:3625441/1‑91 (MQ=255) tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa > 2:1646196/1‑91 (MQ=255) tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa > 2:2351746/1‑91 (MQ=255) tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa < 2:177949/91‑1 (MQ=255) ttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaac < 2:1550713/91‑1 (MQ=255) aTAGCTTTTTTAGTTTTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATg > 2:3390151/1‑91 (MQ=255) tAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGt > 2:3673599/1‑91 (MQ=255) tAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGt < 2:3797517/91‑1 (MQ=255) ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg < 2:3044254/91‑1 (MQ=255) ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg > 2:3326907/1‑91 (MQ=255) tttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGa < 1:538152/91‑1 (MQ=255) tttaaGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGAt < 2:485396/87‑1 (MQ=255) ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa > 1:2592188/1‑91 (MQ=255) tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa < 2:2625410/91‑1 (MQ=255) tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa > 1:2796621/1‑91 (MQ=255) tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa < 1:306520/91‑1 (MQ=255) tAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAAt < 1:689687/91‑1 (MQ=255) gagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGATGCGCCACAACATGTTTGGATGAACAAAATaa < 1:3446921/91‑1 (MQ=255) gagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATaa < 1:3760527/91‑1 (MQ=255) aaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAAc > 2:1938117‑M1/51‑91 (MQ=255) gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATGCAAAAGAGGcgccacaaacatgttattttgttcatccaaac < 1:3367708‑M1/91‑33 (MQ=255) gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa < 2:1967536/91‑1 (MQ=255) gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATAGGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa < 2:339168/91‑1 (MQ=255) tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt < 2:3185549/91‑1 (MQ=255) tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt < 1:773961/91‑1 (MQ=255) cTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg > 1:1436791/1‑91 (MQ=255) cTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg > 2:3707052/1‑91 (MQ=255) tagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt > 1:3502600‑M1/47‑91 (MQ=255) tagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt > 2:1346866‑M1/47‑91 (MQ=255) tAGGACATTGATTGCTGTACCAAATTTGTGATTATGCATAGGTAATACAAAAGAGGcgccacaaacatgttattttgttcatccaaacatg < 1:1916466‑M1/91‑36 (MQ=255) aGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGtt > 2:3548912/1‑91 (MQ=255) aGGACATTGAGTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGtt < 1:2714994/91‑1 (MQ=255) ggACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGttt > 1:3409127/1‑91 (MQ=255) aaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtg > 1:391859‑M1/44‑91 (MQ=255) aCATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgt < 1:3286777/91‑1 (MQ=255) cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg < 1:736630/91‑1 (MQ=255) cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg < 1:2641422/91‑1 (MQ=255) ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggc < 1:440974‑M1/91‑43 (MQ=255) ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGc < 1:3845159/91‑1 (MQ=255) ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACACGTTTGGATGAACAAAATAACATGTTTGTGGc < 2:3111964/91‑1 (MQ=255) ttGATTTCTGTACCAAATTTGTGATTATGCAAATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggc < 2:957442‑M1/91‑43 (MQ=255) cattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCa > 2:1406959‑M1/39‑91 (MQ=255) gATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGATTGTGGCAc < 2:2005314‑M2/91‑2 (MQ=255) ttgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc > 1:2397391‑M1/37‑91 (MQ=255) aTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc > 2:2132016‑M2/1‑89 (MQ=255) aTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc > 2:827143‑M2/1‑89 (MQ=255) tttCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcct < 2:539151‑M2/91‑4 (MQ=255) gtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACctc > 2:1506594‑M1/35‑91 (MQ=255) cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctctt < 2:3878851‑M1/91‑50 (MQ=255) cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctctt < 1:806922‑M1/91‑50 (MQ=255) tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt < 1:108429‑M2/91‑8 (MQ=255) tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt > 1:941976‑M2/1‑84 (MQ=255) tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt < 1:111357‑M2/91‑8 (MQ=255) tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt > 1:943092‑M2/1‑84 (MQ=255) gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt < 2:2571094‑M2/91‑9 (MQ=255) gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt < 1:2053246‑M2/91‑9 (MQ=255) tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg < 1:1598910‑M2/91‑10 (MQ=255) tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg > 2:675065‑M2/1‑82 (MQ=255) aCCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgt > 2:2119963‑M2/1‑81 (MQ=255) aCCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgt < 2:27374‑M2/91‑11 (MQ=255) aaTTTGTGATTAAGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg > 1:2977590/1‑91 (MQ=255) tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa < 2:1111253/91‑1 (MQ=255) tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg > 1:3105556/1‑91 (MQ=255) tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa < 1:1896379/91‑1 (MQ=255) tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa < 2:1436791/91‑1 (MQ=255) tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa > 2:547245/1‑91 (MQ=255) aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt > 1:3590387/1‑91 (MQ=255) atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAATAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt < 2:3421491/91‑1 (MQ=255) atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt < 2:3783482/91‑1 (MQ=255) atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt < 2:2694369/91‑1 (MQ=255) catactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt > 1:99055‑M1/9‑91 (MQ=255) atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt > 1:103019/1‑91 (MQ=255) gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc < 1:648526/91‑1 (MQ=255) gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc < 2:1193829/91‑1 (MQ=255) tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt < 1:3635262/91‑1 (MQ=255) tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt < 1:15333/91‑1 (MQ=255) tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt < 1:1626575/91‑1 (MQ=255) aCAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggt < 2:25473‑M1/91‑82 (MQ=255) ACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACCTGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt > 2:3411563‑M1/1‑91 (MQ=255) aaaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtac > 2:2003638‑M1/1‑8 (MQ=255) aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca < 1:3267213‑M1/91‑85 (MQ=255) aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca > 1:941730‑M1/1‑7 (MQ=255) aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca > 1:2286148‑M1/1‑7 (MQ=255) AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat < 2:1620769‑M1/91‑1 (MQ=255) AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata < 2:3276574‑M1/91‑1 (MQ=255) gagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaa < 2:1658482‑M2/91‑45 (MQ=255) GAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc > 1:1173571‑M1/1‑91 (MQ=255) agGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaa > 1:220959‑M1/1‑3 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat < 1:335199‑M1/91‑90 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat > 2:827097‑M1/1‑2 (MQ=255) ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat > 2:134038‑M1/1‑2 (MQ=255) GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa < 2:436678‑M1/91‑1 (MQ=255) | ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT > USA300TCH1516_ALE/1084673‑1084853 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |