New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1084763151 (0.790)12 (0.070) 9/140 NT 8.5% intergenic (+135/+130) purD/ykoC_1 Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC
?USA300TCH1516_ALE = 1084806 126 (0.760)intergenic (+178/+87) purD/ykoC_1 Phosphoribosylamine‑‑glycine ligase/Putative HMP/thiamine permease protein YkoC

Only 100 of 290 total aligned reads displayed.

ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT  >  USA300TCH1516_ALE/1084673‑1084853
                                                                                          |                                                                                          
gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg                                                                                            <  2:1538694‑M1/10‑1 (MQ=255)
gttaaattttatccataattgtatagatactaaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAgg                                                                                            >  2:3841258‑M1/82‑91 (MQ=255)
   gATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGgcgc                                                                                         >  1:1297857/1‑91 (MQ=255)
    aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc                                                                                        >  1:864784/1‑91 (MQ=255)
    aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc                                                                                        <  2:2916734/91‑1 (MQ=255)
    aTTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGcc                                                                                        >  1:1351238/1‑91 (MQ=255)
      tttttGATAGCTTTTTTAGTTGTAGCGTCTAGGACATTGATTTCTGTACCAAAGTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac                                                                                      <  1:3611563/91‑1 (MQ=255)
      tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac                                                                                      <  2:2445991/91‑1 (MQ=255)
      tttttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCcac                                                                                      >  2:3625441/1‑91 (MQ=255)
        tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa                                                                                    >  2:1646196/1‑91 (MQ=255)
        tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa                                                                                    >  2:2351746/1‑91 (MQ=255)
        tttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaa                                                                                    <  2:177949/91‑1 (MQ=255)
         ttCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCacaac                                                                                   <  2:1550713/91‑1 (MQ=255)
            aTAGCTTTTTTAGTTTTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATg                                                                                >  2:3390151/1‑91 (MQ=255)
             tAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGt                                                                               >  2:3673599/1‑91 (MQ=255)
             tAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGt                                                                               <  2:3797517/91‑1 (MQ=255)
                 ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg                                                                           <  2:3044254/91‑1 (MQ=255)
                 ttttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTgg                                                                           >  2:3326907/1‑91 (MQ=255)
                  tttttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGa                                                                          <  1:538152/91‑1 (MQ=255)
                   tttaaGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGAt                                                                         <  2:485396/87‑1 (MQ=255)
                     ttAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGa                                                                       >  1:2592188/1‑91 (MQ=255)
                      tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa                                                                      <  2:2625410/91‑1 (MQ=255)
                      tAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGaa                                                                      >  1:2796621/1‑91 (MQ=255)
                          tGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACaaa                                                                  <  1:306520/91‑1 (MQ=255)
                            tAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAAt                                                                <  1:689687/91‑1 (MQ=255)
                              gagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGATGCGCCACAACATGTTTGGATGAACAAAATaa                                                              <  1:3446921/91‑1 (MQ=255)
                              gagTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATaa                                                              <  1:3760527/91‑1 (MQ=255)
                               aaattagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAAc                                                             >  2:1938117‑M1/51‑91 (MQ=255)
                                gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATGCAAAAGAGGcgccacaaacatgttattttgttcatccaaac                                                            <  1:3367708‑M1/91‑33 (MQ=255)
                                gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa                                                            <  2:1967536/91‑1 (MQ=255)
                                gTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATAGGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACa                                                            <  2:339168/91‑1 (MQ=255)
                                 tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt                                                           <  2:3185549/91‑1 (MQ=255)
                                 tCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACAt                                                           <  1:773961/91‑1 (MQ=255)
                                  cTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg                                                          >  1:1436791/1‑91 (MQ=255)
                                  cTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATg                                                          >  2:3707052/1‑91 (MQ=255)
                                   tagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt                                                         >  1:3502600‑M1/47‑91 (MQ=255)
                                   tagaaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGt                                                         >  2:1346866‑M1/47‑91 (MQ=255)
                                   tAGGACATTGATTGCTGTACCAAATTTGTGATTATGCATAGGTAATACAAAAGAGGcgccacaaacatgttattttgttcatccaaacatg                                                         <  1:1916466‑M1/91‑36 (MQ=255)
                                    aGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGtt                                                        >  2:3548912/1‑91 (MQ=255)
                                    aGGACATTGAGTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGtt                                                        <  1:2714994/91‑1 (MQ=255)
                                     ggACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGttt                                                       >  1:3409127/1‑91 (MQ=255)
                                      aaattcattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtg                                                      >  1:391859‑M1/44‑91 (MQ=255)
                                       aCATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgt                                                     <  1:3286777/91‑1 (MQ=255)
                                        cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg                                                    <  1:736630/91‑1 (MQ=255)
                                        cATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTtgtg                                                    <  1:2641422/91‑1 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggc                                                  <  1:440974‑M1/91‑43 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGc                                                  <  1:3845159/91‑1 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACACGTTTGGATGAACAAAATAACATGTTTGTGGc                                                  <  2:3111964/91‑1 (MQ=255)
                                          ttGATTTCTGTACCAAATTTGTGATTATGCAAATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggc                                                  <  2:957442‑M1/91‑43 (MQ=255)
                                           cattgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCa                                                 >  2:1406959‑M1/39‑91 (MQ=255)
                                            gATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGATTGTGGCAc                                                <  2:2005314‑M2/91‑2 (MQ=255)
                                             ttgtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc                                               >  1:2397391‑M1/37‑91 (MQ=255)
                                             aTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc                                               >  2:2132016‑M2/1‑89 (MQ=255)
                                             aTTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcc                                               >  2:827143‑M2/1‑89 (MQ=255)
                                              tttCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcct                                              <  2:539151‑M2/91‑4 (MQ=255)
                                               gtatagaaaaagaaaaccatttattccatactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACctc                                             >  2:1506594‑M1/35‑91 (MQ=255)
                                                 cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctctt                                           <  2:3878851‑M1/91‑50 (MQ=255)
                                                 cTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctctt                                           <  1:806922‑M1/91‑50 (MQ=255)
                                                  tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt                                          <  1:108429‑M2/91‑8 (MQ=255)
                                                  tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt                                          >  1:941976‑M2/1‑84 (MQ=255)
                                                  tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt                                          <  1:111357‑M2/91‑8 (MQ=255)
                                                  tGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttt                                          >  1:943092‑M2/1‑84 (MQ=255)
                                                   gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt                                         <  2:2571094‑M2/91‑9 (MQ=255)
                                                   gTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctctttt                                         <  1:2053246‑M2/91‑9 (MQ=255)
                                                    tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg                                        <  1:1598910‑M2/91‑10 (MQ=255)
                                                    tACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttg                                        >  2:675065‑M2/1‑82 (MQ=255)
                                                     aCCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgt                                       >  2:2119963‑M2/1‑81 (MQ=255)
                                                     aCCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgt                                       <  2:27374‑M2/91‑11 (MQ=255)
                                                         aaTTTGTGATTAAGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAg                                   >  1:2977590/1‑91 (MQ=255)
                                                           tttGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTa                                 <  2:1111253/91‑1 (MQ=255)
                                                             tgtgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATg                               >  1:3105556/1‑91 (MQ=255)
                                                               tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                             <  1:1896379/91‑1 (MQ=255)
                                                               tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                             <  2:1436791/91‑1 (MQ=255)
                                                               tgATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGa                             >  2:547245/1‑91 (MQ=255)
                                                                 aTTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAAt                           >  1:3590387/1‑91 (MQ=255)
                                                                        atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAATAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                    <  2:3421491/91‑1 (MQ=255)
                                                                        atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                    <  2:3783482/91‑1 (MQ=255)
                                                                        atatGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGt                    <  2:2694369/91‑1 (MQ=255)
                                                                         catactaaACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGtt                   >  1:99055‑M1/9‑91 (MQ=255)
                                                                          atGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttt                  >  1:103019/1‑91 (MQ=255)
                                                                            gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc                <  1:648526/91‑1 (MQ=255)
                                                                            gTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttc                <  2:1193829/91‑1 (MQ=255)
                                                                                tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt            <  1:3635262/91‑1 (MQ=255)
                                                                                tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt            <  1:15333/91‑1 (MQ=255)
                                                                                tACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttctttt            <  1:1626575/91‑1 (MQ=255)
                                                                                 aCAAAAGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggt           <  2:25473‑M1/91‑82 (MQ=255)
                                                                                 ACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACCTGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGttttcttttt           >  2:3411563‑M1/1‑91 (MQ=255)
                                                                                   aaaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtac         >  2:2003638‑M1/1‑8 (MQ=255)
                                                                                    aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca        <  1:3267213‑M1/91‑85 (MQ=255)
                                                                                    aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca        >  1:941730‑M1/1‑7 (MQ=255)
                                                                                    aaaGAGGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtaca        >  1:2286148‑M1/1‑7 (MQ=255)
                                                                                     AAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtat       <  2:1620769‑M1/91‑1 (MQ=255)
                                                                                      AGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCtata      <  2:3276574‑M1/91‑1 (MQ=255)
                                                                                       gagGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCAcctcttttgtattacatatgcataatcacaaatttggtacagaa     <  2:1658482‑M2/91‑45 (MQ=255)
                                                                                       GAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATAc     >  1:1173571‑M1/1‑91 (MQ=255)
                                                                                        agGtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaa    >  1:220959‑M1/1‑3 (MQ=255)
                                                                                         ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat   <  1:335199‑M1/91‑90 (MQ=255)
                                                                                         ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat   >  2:827097‑M1/1‑2 (MQ=255)
                                                                                         ggtgccacaaacatgttattttgttcatccaaacatgttgtggcgcctcttttgtattacatatgcataatcacaaatttggtacagaaat   >  2:134038‑M1/1‑2 (MQ=255)
                                                                                         GGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACaa   <  2:436678‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
ATAGATTTTTTCATAGCTTTTTTAGTTGTAGAGTCTAGGACATTGATTTCTGTACCAAATTTGTGATTATGCATATGTAATACAAAAGAGGCGCCACAACATGTTTGGATGAACAAAATAACATGTTTGTGGCACCTCTTTTGTTTAGTATGGAATAAATGGTTTTCTTTTTCTATACAAT  >  USA300TCH1516_ALE/1084673‑1084853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.