New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1114106	137 (0.720)	17 (0.110)	11/126	NT	13.8%	intergenic (+35/+47)	USA300HOU_RS05510/mntH_1	hypothetical protein/Divalent metal cation transporter MntH
	?	USA300TCH1516_ALE	= 1114131	104 (0.700)					intergenic (+60/+22)	USA300HOU_RS05510/mntH_1	hypothetical protein/Divalent metal cation transporter MntH

ATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1114000‑1114106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccattaaaatgttGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATG  <  USA300TCH1516_ALE/1114131‑1114042                                                                                                                                                                                                       ATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAA                                                                                                            >  2:1002146/1‑91 ATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAA                                                                                                            >  1:564240/1‑91  TGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAA                                                                                                           <  1:1768654/91‑1    ATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAA                                                                                                         <  2:1511975/91‑1    ATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTAATAGCAAAAGAAAAA                                                                                                         <  2:775635/91‑1     TTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAAC                                                                                                        <  2:2073721/91‑1     TTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAAC                                                                                                        <  2:2116233/91‑1       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      >  1:1410857/1‑91       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      <  1:973438/91‑1       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      >  1:3592390/1‑91       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      >  1:681286/1‑91       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      <  1:3788601/91‑1       ATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCA                                                                                                      >  1:3592442/1‑91        aGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  2:3225560/2‑91        TGTTGATTTGTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGATAAACCAT                                                                                                     >  1:1946396/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGACAAACCAT                                                                                                     >  1:1946705/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  2:2544106/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  2:300339/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  2:303916/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  1:1425445/1‑91        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     <  2:85040/91‑1        TGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     <  2:85234/91‑1          TTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTA                                                                                                   >  2:2701220/1‑91          TTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTA                                                                                                   <  2:419348/91‑1           TGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAA                                                                                                  >  1:3186794/1‑91           TGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAA                                                                                                  <  2:1617325/91‑1           TGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAA                                                                                                  <  1:2416569/91‑1           TGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAA                                                                                                  <  2:2117817/91‑1           TGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAA                                                                                                  <  2:3097443/91‑1            GATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAA                                                                                                 >  2:2099231/1‑91            GATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAA                                                                                                 >  2:2099245/1‑91             ATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAA                                                                                                <  1:122326/91‑1             ATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAA                                                                                                <  1:2943556/91‑1              TTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAAT                                                                                               <  1:940307/91‑1               TTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATG                                                                                              <  2:1167700/91‑1               TTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATG                                                                                              <  1:413353/91‑1               TTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATG                                                                                              <  1:413648/91‑1               TTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATG                                                                                              >  2:2243454/1‑91                TCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGT                                                                                             >  1:2532470/1‑91                TCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGT                                                                                             >  1:1094726/1‑91                TCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGT                                                                                             <  2:3150368/91‑1                TCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGT                                                                                             >  2:2724133/1‑91                    AAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     <  2:28685/79‑1                    AAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCAT                                                                                                     >  1:28685/1‑79                                 AGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAAT                                                                            <  1:911693/91‑1                                          ACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTT                                                                   <  1:3147130/91‑1                                            ATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAA                                                                 <  2:1341365/91‑1                                             TAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAAC                                                                <  1:3531525/91‑1                                              AAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACA                                                               <  1:230706/91‑1                                                   CGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTA                                                          <  2:907005/91‑1                                                    GATGAGTATATTTATCATTAATATGTTCATAGTAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAA                                                         <  2:2823772/91‑1                                                    GATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAA                                                         <  1:229962/91‑1                                                    GATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAA                                                         <  1:230623/91‑1                                                    GATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAA                                                         <  1:1345571/91‑1                                                     ATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAAT                                                        <  2:1094726/91‑1                                                      TGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATG                                                       <  1:2743089/91‑1                                                      TGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATG                                                       <  1:281851/91‑1                                                      TGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATG                                                       <  1:1446651/91‑1                                                        AGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGT                                                     <  1:2857300/91‑1                                                        AGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGT                                                     <  2:218395/91‑1                                                          TATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTT                                                   <  2:1426875/91‑1                                                                                            AAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATA                 >  2:3728176/1‑91                                                                                            AAACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATA                 >  1:2219970/1‑91                                                                                             AACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATAC                <  2:1993652/91‑1                                                                                             AACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATAC                <  1:921816/91‑1                                                                                              ACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACT               >  1:2424212/1‑91                                                                                              ACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACT               <  2:2617647/91‑1                                                                                              ACCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACT               >  1:898924/1‑91                                                                                               CCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTC              <  1:1621187/91‑1                                                                                               CCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTC              >  2:2798496/1‑91                                                                                               CCATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTC              <  2:400940/91‑1                                                                                                CATTAAACTGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCA             <  2:3447385/91‑1                                                                                                CATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCA             >  2:1341382/1‑91                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  1:2189530/91‑1                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  2:898924/91‑1                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  1:2189346/91‑1                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  2:203781/91‑1                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  1:2167415/91‑1                                                                                                 ATTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCAT            <  1:2567577/91‑1                                                                                                  TTAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATC           >  2:1428977/1‑91                                                                                                   TAAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCG          <  2:3762838/91‑1                                                                                                    AAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGT         >  1:548319/1‑91                                                                                                    AAAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGT         <  2:1484964/91‑1                                                                                                     AAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTC        >  2:1219537/1‑91                                                                                                     AAATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTC        >  2:2892565/1‑91                                                                                                      AATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCC       >  2:1840208/1‑91                                                                                                       ATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCT      <  1:1835112/91‑1                                                                                                       ATGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCT      <  1:1835326/91‑1                                                                                                        TGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTT     >  1:1350960/1‑91                                                                                                        TGTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTT     <  2:1873259/91‑1                                                                                                         GTTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTA    <  1:782461/91‑1                                                                                                          TTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTAT   <  2:193614/91‑1                                                                                                          TTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTAT   <  1:2742740/91‑1                                                                                                          TTGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTAT   <  1:3845283/91‑1                                                                                                           TGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATG  <  2:389359/91‑1                                                                                                           TGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATG  <  2:391436/91‑1                                                                                                           TGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATG  <  2:395279/91‑1                                                                                                                                                                                                       ATGATTATGTTGATTTCTAAAAAAGAATCAAAAGAAACAACACATAAGGACGATGAGTATATTTATCATTAATATGTTCATAGCAAAAGAAAAACCATTAAAATGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1114000‑1114106 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaccattaaaatgttGGTTGTATCTAATAATTAACAACTTAACATTTTAATGGTTTTTCTTTTGCTATGAACATATTAATGATAAATATACTCATCGTCCTTATG  <  USA300TCH1516_ALE/1114131‑1114042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.