| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1119604 | 153 (0.800) | 34 (0.210) | 16/136 | NT | 19.9% | intergenic (+23/+286) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1119622 | 144 (0.890) | intergenic (+41/+268) | typA/USA300HOU_RS05545 | GTP‑binding protein TypA/BipA/hypothetical protein | |||||
Only 100 of 113 total aligned reads displayed.
AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1119503‑1119604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagagaagctAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTTCA < USA300TCH1516_ALE/1119622‑1119533 AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATA > 1:3727601/1‑91AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATA < 2:717662/91‑1 GAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA > 2:1657487/1‑91 GAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA < 1:2391065/91‑1 GAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA < 2:390086/91‑1 GAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA > 2:651150/1‑91 GAAAGAAAATTTTAAACAAAAATGTTCGAGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAA < 2:2293682/91‑1 AAAGAAAATTTTCAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAA > 1:2969630/1‑91 AAAGAAAATTTTCAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAA > 1:2970632/1‑91 AAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAG < 2:2733126/91‑1 AAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAG < 2:2733205/91‑1 AAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAG < 1:263148/91‑1 AGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATTAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGA < 1:1794853/91‑1 AGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGA > 2:3832864/1‑91 AGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGA > 1:2301715/1‑91 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG < 2:95213/91‑1 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG < 2:450526/91‑1 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG > 2:2879170/1‑91 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG > 1:849282/1‑91 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG < 2:1657066/91‑1 GAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAG < 2:95130/91‑1 AAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGA < 1:2255836/91‑1 AAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAA < 2:2786026/91‑1 AAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAA < 1:42642/91‑1 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAACTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG > 2:3416372/1‑91 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG > 2:622989/1‑91 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG > 2:623286/1‑91 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG < 1:2074050/91‑1 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG > 1:1082169/1‑91 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG < 1:452571/91‑1 AATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAG < 2:3747371/91‑1 ATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGC < 2:639490/91‑1 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 2:556450/1‑91 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:164102/1‑91 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:164197/1‑91 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:1932051/1‑91 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT < 1:3520236/91‑1 TTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT > 1:164090/1‑91 ATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCA < 2:2409989/91‑1 TTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCG < 1:3856369/91‑1 CGTGAGAAAGGAGCAAATCGTATCAAACAAAGCATGCAAGAAAACGAATAATTTAACATAATAAGAGGGAAGCTAAGCAACTTTCATCGCT < 2:1251140/91‑1 CGTGAAAGAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCc < 1:1942675/91‑2 CGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCT < 1:1892544/91‑1 CGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCT < 2:3879008/91‑1 ggGAAAAAGAAGCAATGCGGATCAAACAGCTGATGCTAGAAAACGAGTAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCAGCGCTC < 2:3295523/89‑1 GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTC < 1:673290/91‑1 GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTC < 1:2885494/91‑1 GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTC < 1:2687145/91‑1 GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTC < 2:1234763/91‑1 TGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCA < 1:3256248/91‑1 GAAAAAGAAGCAAAGCGTATCAGACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAGGAGAAGCTAAGCAACTTTCATCGCTCAG < 1:3434710/91‑1 GAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAG < 2:825937/91‑1 AAAAAGAAGCAAAGCGTGTCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGC < 1:1065820/91‑1 AAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGC < 1:1065521/91‑1 AAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGC < 1:1065853/91‑1 AAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCT < 2:2021552/91‑1 AAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTT < 1:1969629/91‑1 aAAGCAAGGCGTAACAAACAACGGATGCAAGAAAGCCAATAATTTAACATAATAAAAGAGAAGCTAACCAACTTTCATCGCTCGGCTTCTC < 2:3832087/90‑1 GAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC < 2:3331326/91‑1 GAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTC < 1:85561/91‑1 AAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTAAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTT < 2:3769364/87‑1 AAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTAAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTT > 1:3769364/1‑87 AGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTT < 2:3197860/91‑1 AGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTC < 1:3716368/81‑1 CAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTT < 1:795911/91‑1 ATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTT < 1:502603/91‑1 ATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTT < 1:501918/91‑1 AAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTG < 2:3025748/91‑1 AAAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTG < 2:1011595/91‑1 AAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGC < 1:556463/91‑1 AAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGC > 2:754151/1‑91 AAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGC > 2:754188/1‑91 AAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGC < 1:2078769/91‑1 AAAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGC < 1:2953789/91‑1 AAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCT < 1:2101451/91‑1 AAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCT < 2:1432831/91‑1 AAGAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCT < 1:3271393/91‑1 aggGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTT < 2:1632296/88‑1 GAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTC > 1:2024008/1‑91 GAGAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTC > 2:3799396/1‑91 GAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTT > 2:3550652/1‑91 GAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTT > 1:2047624/1‑91 GAAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTT > 2:1171916/1‑91 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTT < 2:1623371/91‑1 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTT > 1:3578339/1‑91 AAGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTT > 1:769117/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAACTTATTCGTTTTCTTGCCTCCTTTGTTTGATACGCTTTGCTTCTTTT > 2:2676985/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 1:3434654/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 2:943350/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 1:945443/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 2:737635/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT < 1:360251/91‑1 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 1:2228135/1‑91 AGCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTT > 1:2444351/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTT < 2:680173/91‑1 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTT > 2:732894/1‑91 GCTAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTT < 1:332142/91‑1 TAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAATTTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTTCA < 2:3413380/91‑1 TAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTTCA > 2:1627994/1‑91 TAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTTCA > 2:1084199/1‑91 AAGAAAGAAAATTTTAAACAAAAATGTTCGTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1119503‑1119604‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagagaagctAAGCAACTTTCATCGCTCAGCTTCTCTTTTATTATGTTAAATTATTCGTTTTCTTGCATCATTTGTTTGATACGCTTTGCTTCTTTTTCA < USA300TCH1516_ALE/1119622‑1119533 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |