BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1119604	153 (0.800)	34 (0.210)	16/136	NT	19.9%	intergenic (+23/+286)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein
*	?	USA300TCH1516_ALE	= 1119622	144 (0.890)	34 (0.210)	16/136	NT	19.9%	intergenic (+41/+268)	typA/USA300HOU_RS05545	GTP‑binding protein TypA/BipA/hypothetical protein

Only 100 of 307 total aligned reads displayed.

GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTA  >  USA300TCH1516_ALE/1119532‑1119712

tgaaaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCtt                                                                                            >  2:419626‑M1/62‑91 (MQ=255)

   aaatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGc                                                                                         >  1:906133‑M1/59‑91 (MQ=255)

    aatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCt                                                                                        >  1:279494‑M1/58‑91 (MQ=255)

    aatgtgaaagtaacaggaaataatagcatttaaacactttttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCt                                                                                        >  1:2611918‑M1/58‑91 (MQ=255)

    aatgtgaaagtaacaggaaataatagcatttaaacacttttgcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCt                                                                                        >  2:1474928‑M1/58‑91 (MQ=255)

    aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct                                                                                        >  2:943350‑M2/1‑87 (MQ=255)

    aaaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct                                                                                        >  2:737621‑M2/1‑87 (MQ=255)

    aaaaGAAGCAAAGCGTATCAAACAAAGGAGGCAAGAAAACGAATAAGTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagct                                                                                        >  2:2676985‑M2/1‑87 (MQ=255)

     atgtgaaagtaacaggaaataatagcatttaaacactgtttcaaatattatatgccAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCtt                                                                                       >  1:3300757‑M1/57‑91 (MQ=255)

     aaaGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagctt                                                                                       <  2:1623371‑M2/91‑6 (MQ=255)

          agCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagcttctctt                                                                                  <  1:2101451‑M2/91‑11 (MQ=255)

           gCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagcttctcttt                                                                                 >  2:754188‑M2/1‑80 (MQ=255)

           gCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTagcttctcttt                                                                                 <  1:2953789‑M2/91‑12 (MQ=255)

              aaGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTgg                                                                              >  1:3475519/1‑91 (MQ=255)

               aGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGc                                                                             >  2:659609/1‑91 (MQ=255)

                gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                            >  1:3345593/1‑91 (MQ=255)

                gCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCa                                                                            >  1:2369584/1‑91 (MQ=255)

                 cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                           <  2:1793446/91‑1 (MQ=255)

                 cGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCat                                                                           <  1:3389029/91‑1 (MQ=255)

                  gTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCata                                                                          <  2:1958132/91‑1 (MQ=255)

                    aTCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCAtata                                                                        >  2:1011857/1‑91 (MQ=255)

                    aTCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCAtata                                                                        >  2:2320223/1‑91 (MQ=255)

                      caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                      >  1:2197403/1‑91 (MQ=255)

                      caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                      >  1:144105/1‑91 (MQ=255)

                      caaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataat                                                                      >  2:2767379/1‑91 (MQ=255)

                       aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGCAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                     <  1:2523735/91‑1 (MQ=255)

                       aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                     >  2:3267464/1‑91 (MQ=255)

                       aaacaaaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATataata                                                                     >  1:970085/1‑91 (MQ=255)

                            aaTGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGa                                                                <  1:3214802/91‑1 (MQ=255)

                               gatgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAATTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaa                                                             <  1:3274245/91‑1 (MQ=255)

                               gatgCAAGAAAACGAATAATTTAACACAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaa                                                             >  2:2222663/1‑91 (MQ=255)

                                atgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGaaaaa                                                            >  1:3560384/1‑91 (MQ=255)

                                 tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAg                                                           <  1:1250043/91‑1 (MQ=255)

                                 tgCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCGTTTGGCATATAATATTTGAAAAAg                                                           >  2:518538/1‑91 (MQ=255)

                                  gCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAgt                                                          <  2:3281977/91‑1 (MQ=255)

                                      gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt                                                      <  2:1655809/91‑1 (MQ=255)

                                      gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt                                                      >  1:71628/1‑91 (MQ=255)

                                      gAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGttt                                                      <  2:2567785/91‑1 (MQ=255)

                                        aaaCGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTaa                                                    >  1:60810/1‑91 (MQ=255)

                                           cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                 >  1:3110293/1‑91 (MQ=255)

                                           cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                 >  2:3336176/1‑91 (MQ=255)

                                           cGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATg                                                 <  2:2101451/91‑1 (MQ=255)

                                            gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                <  1:427126/91‑1 (MQ=255)

                                            gAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGc                                                >  1:1160981/1‑91 (MQ=255)

                                             aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                               >  2:3024995/1‑91 (MQ=255)

                                             aataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCt                                               >  2:1372025/1‑91 (MQ=255)

                                              ataatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCta                                              <  1:161920/91‑1 (MQ=255)

                                               taatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATAAATAAAAAAGTGTTTAAATGCtat                                             <  2:3427707/91‑1 (MQ=255)

                                                aatattatatgccTAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt                                            >  2:3315731‑M1/14‑91 (MQ=255)

                                                aatTTAACATAATAAAAGAGAAGCTGTGCGATGAACGTTGCTTAGCTGCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt                                            <  1:862510/91‑1 (MQ=255)

                                                aatTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtatt                                            <  1:368151/91‑1 (MQ=255)

                                                  tttAACATAATAAAAGAGAAGCTGAGAGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCtattat                                          <  2:1130675/91‑1 (MQ=255)

                                                      aCATAATAAAAGATAAGCTGAGCGATGAAAGTTGCTTAGCTTCGCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                      <  1:3883248/91‑1 (MQ=255)

                                                      aCATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTcc                                      <  2:3727601/91‑1 (MQ=255)

                                                       cATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCt                                     >  1:273017/1‑91 (MQ=255)

                                                             AAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACt                               >  2:706634‑M1/1‑91 (MQ=255)

                                                              AAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACtt                              >  1:3035158‑M1/1‑91 (MQ=255)

                                                               AAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACttt                             >  1:792949‑M1/1‑91 (MQ=255)

                                                               AAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAAAAAAAGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACttt                             >  2:1082169‑M1/1‑91 (MQ=255)

                                                                AGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTc                            <  1:684850‑M1/91‑1 (MQ=255)

                                                                 gagaAGCCGAGCGATGAAAGTTGGTTagcttctcttttattatgttaaattattggctttcttgcatccgttgtttgttacgccttgcttt                           <  2:3832087‑M2/91‑66 (MQ=255)

                                                                 GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                           <  2:1447234‑M1/91‑1 (MQ=255)

                                                                 GAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTca                           >  2:2543239‑M1/1‑91 (MQ=255)

                                                                  AGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcac                          >  1:3839255‑M1/1‑91 (MQ=255)

                                                                   GAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTcaca                         <  2:2021635‑M1/91‑1 (MQ=255)

                                                                    aaGCTGAGCGATGAAAGTTGCTTagcttctcttttattatgtttaattattcgttttcttgcatcatttgtttgatacgctttgctt                            >  1:3769364‑M2/1‑23 (MQ=255)

                                                                    aaGCTGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttcttt                        <  1:1969629‑M2/91‑69 (MQ=255)

                                                                    AAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAt                        <  1:1698419‑M1/91‑1 (MQ=255)

                                                                     AGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAtt                       >  2:2855581‑M1/1‑91 (MQ=255)

                                                                      gCTGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttcttttt                      <  1:1065521‑M2/91‑71 (MQ=255)

                                                                      GCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                      <  1:539790‑M1/91‑1 (MQ=255)

                                                                      GCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACAttt                      <  2:1716282‑M1/91‑1 (MQ=255)

                                                                       cTGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttc                     <  2:825937‑M2/91‑72 (MQ=255)

                                                                        tGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttca                    <  1:343369‑M2/91‑73 (MQ=255)

                                                                        tGAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttca                    <  1:3256248‑M2/91‑73 (MQ=255)

                                                                         gAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttcac                   <  2:1234763‑M2/91‑74 (MQ=255)

                                                                         gAGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttcac                   <  1:2687174‑M2/91‑74 (MQ=255)

                                                                         gAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCa                   >  2:2925619/1‑91 (MQ=255)

                                                                          aGCGATGAAAGTTGCTTagcttctcttttattatgttaaattattcgttttcttgcatcatttgtttgatacgctttgcttctttttcacg                  <  1:1892544‑M2/91‑75 (MQ=255)

                                                                           gCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCaaa                 >  2:783395/1‑91 (MQ=255)

                                                                             gATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAtt               <  2:2369584/91‑1 (MQ=255)

                                                                              aTGAATGTTGCTTAGCTTCTCTTTTCGCATATAATATTTGAAAAAGTGTTTAAGTGCTATTATTTCCTGTTACTTTCACATTTTCAAAttt              <  1:3607884/91‑1 (MQ=255)

                                                                              aTGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAAttt              <  2:3788031/91‑1 (MQ=255)

                                                                               tGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTc             <  1:485851/91‑1 (MQ=255)

                                                                               tGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTc             <  2:3145962/91‑1 (MQ=255)

                                                                                 aaaGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTa           <  2:3698718/91‑1 (MQ=255)

                                                                                  aaGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTaa          <  1:1487838/91‑1 (MQ=255)

                                                                                  aaGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTCTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTaa          >  1:137706/1‑91 (MQ=255)

                                                                                  aaGTTGCTTAACTTCTCTTTTGGCATATAATAAATGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTaa          <  2:2648380/91‑1 (MQ=255)

                                                                                   aGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAAc         >  1:1094665/1‑91 (MQ=255)

                                                                                    gTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACt        <  2:3250362/91‑1 (MQ=255)

                                                                                      tGCTTAGCTTCTCTTTTGGCATATAATATTTCAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTACACATTTTCAACTTTCTAACTTg      >  2:2965644/1‑91 (MQ=255)

                                                                                       gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTgg     >  2:3854470/1‑90 (MQ=255)

                                                                                       gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt     >  2:3154874/1‑91 (MQ=255)

                                                                                       gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt     <  2:1292731/91‑1 (MQ=255)

                                                                                       gCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTCAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt     <  2:3406679/91‑1 (MQ=255)

                                                                                       gCTTAGCTTCTCTTTTAGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGt     <  2:2984485/91‑1 (MQ=255)

                                                                                        cTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGtt    <  1:2320223/91‑1 (MQ=255)

                                                                                          tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa  <  1:2060030/91‑1 (MQ=255)

                                                                                          tAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTa  <  1:1802237/91‑1 (MQ=255)

GTGAAAAAGAAGCAAAGCGTATCAAACAAATGATGCAAGAAAACGAATAATTTAACATAATAAAAGAGAAGCTGAGCGATGAAAGTTGCTTAGCTTCTCTTTTGGCATATAATATTTGAAAAAGTGTTTAAATGCTATTATTTCCTGTTACTTTCACATTTTCAAATTTCTAACTTGTTTA  >  USA300TCH1516_ALE/1119532‑1119712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.