| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1119914 = | 190 (1.000) | 14 (0.080) | 7/148 | NT | 7.6% | coding (459/483 nt) | USA300HOU_RS05545 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1119940 = | 165 (0.940) | coding (433/483 nt) | USA300HOU_RS05545 | hypothetical protein | |||||
CAATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1120009‑1119914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA > USA300TCH1516_ALE/1119940‑1120029 CAATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCA > 2:539790/1‑91CAATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCA > 1:730659/1‑91CAATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCA > 1:730538/1‑91 AATTTGCAAAAGACTGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAA > 2:3295155/1‑91 AATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAA > 2:2505396/1‑91 AATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTGTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAA > 2:3300521/1‑91 ATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAAC < 1:1552552/91‑1 ATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAAC > 1:923577/1‑91 ATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAAC < 1:2769580/91‑1 TTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACC > 1:3208477/1‑91 TTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACC > 1:580096/1‑91 TGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCACGAAGATGGTTATTCATATCGAATCAACCAT > 2:2453925/1‑91 TGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGTTGGTTCTTCATATCGAATCAACCAT > 1:1801191/1‑91 TGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACCAT > 1:3773006/1‑91 TGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACCAT > 1:959764/1‑91 GATGGTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGC > 1:511366/1‑91 ATGGTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCA > 1:833578/1‑91 ATGGTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCA > 1:541130/1‑91 TGGTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAA > 1:671182/1‑91 GTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAAT > 2:3682698/1‑91 GTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAAT > 1:634749/1‑91 GTTATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAAT > 2:3682594/1‑91 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT < 2:326152/73‑1 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT < 2:325708/73‑1 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT < 2:2257930/73‑1 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT > 1:2257930/1‑73 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT > 1:326152/1‑73 TATTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTT > 1:325708/1‑73 TTCATATCGAATCAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGA > 2:1632422/1‑91 CAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGG > 1:2717259/1‑91 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGG > 1:444267/1‑91 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGG > 1:3824410/1‑91 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGG < 2:1137589/91‑1 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGG < 2:1770308/91‑1 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGG < 2:1770380/91‑1 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTAC < 1:5099/60‑1 AACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTAC > 2:5099/1‑60 ACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGT < 2:802067/91‑1 ACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGT < 1:3037351/91‑1 CATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAA < 1:2989293/91‑1 CATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAA < 1:3509765/91‑1 CATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAA < 1:3369442/91‑1 CATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAA < 1:2989334/91‑1 ATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAAT > 2:1655925/1‑91 ATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAAT > 1:1415118/1‑91 ATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAAT > 2:841382/1‑91 TCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA < 2:139153/91‑1 TCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA < 1:183921/91‑1 TCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA < 1:704969/91‑1 TCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA < 2:836061/91‑1 TCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGATAATA > 2:3584303/1‑91 CAATTTGCAAAAGACGGTAAACGACTTTACAGCGATAATGGTGTAGATAGTTTTATTTACAATCAAGAAGATGGTTATTCATATCGAATCAACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1120009‑1119914‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA > USA300TCH1516_ALE/1119940‑1120029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |