BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1119914 =	190 (1.000)	14 (0.080)	7/148	NT	7.6%	coding (459/483 nt)	USA300HOU_RS05545	hypothetical protein
*	?	USA300TCH1516_ALE	1119940 =	165 (0.940)	14 (0.080)	7/148	NT	7.6%	coding (433/483 nt)	USA300HOU_RS05545	hypothetical protein

Only 100 of 258 total aligned reads displayed.

TACTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA  >  USA300TCH1516_ALE/1119850‑1120029

tACTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtc                                                                                           <  2:1932051/91‑1 (MQ=255)

tACTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtc                                                                                           >  1:2920382/1‑91 (MQ=255)

gcaaaagacggtaaacgactttacagcgataatggtgtagatagttttatttacaatcaagaagATGGTTGATTCGATATGAATAACCAtc                                                                                           >  1:511366‑M1/65‑91 (MQ=255)

  cTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtctt                                                                                         <  2:694338/91‑1 (MQ=255)

  cTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtctt                                                                                         <  2:2242011/91‑1 (MQ=255)

  cTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtctt                                                                                         >  1:409774/1‑91 (MQ=255)

   ttttGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtcttc                                                                                        >  2:1489882/1‑91 (MQ=255)

   ttttGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCAtcttc                                                                                        <  1:3764166/91‑1 (MQ=255)

    tttGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGGGTTACATGGTTGATTCGATATGAATAACCAtcttca                                                                                       >  2:3840697/1‑90 (MQ=255)

      tGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTg                                                                                     >  1:20846/1‑91 (MQ=255)

      tGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTAGATATGAATAACCATCTTCTTg                                                                                     >  2:1247156/1‑91 (MQ=255)

       gCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGa                                                                                    >  2:3650339/1‑91 (MQ=255)

       gCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGa                                                                                    >  1:3455495/1‑91 (MQ=255)

        cATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGAt                                                                                   >  1:2829830/1‑91 (MQ=255)

          tCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTg                                                                                 >  1:1056017/1‑91 (MQ=255)

          tCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTg                                                                                 <  2:1074349/91‑1 (MQ=255)

          tCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTg                                                                                 <  1:2330467/91‑1 (MQ=255)

            acaGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGta                                                                               >  1:1758652/1‑91 (MQ=255)

                aTAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGtaaata                                                                           >  2:436909/1‑91 (MQ=255)

                 tAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGtaaataa                                                                          <  2:3196753/91‑1 (MQ=255)

                   aTGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATaaaa                                                                        >  2:3369442/1‑91 (MQ=255)

                   aTGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATaaaa                                                                        >  2:2477163/1‑91 (MQ=255)

                   aTGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATaaaa                                                                        <  1:767331/91‑1 (MQ=255)

                   aTGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATaaaa                                                                        >  1:3688842/1‑91 (MQ=255)

                   aTGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATaaaa                                                                        >  1:3327696/1‑91 (MQ=255)

                     gCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACt                                                                      >  2:1175670/1‑91 (MQ=255)

                             cTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTacac                                                              <  2:908085/91‑1 (MQ=255)

                              ttGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGTATAACCATCTTCTTTATTGTAAATAAAACTATCTACAcc                                                             <  2:537028/91‑1 (MQ=255)

                              ttGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACAcc                                                             <  2:2542433/91‑1 (MQ=255)

                               tGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCa                                                            <  2:2239381/91‑1 (MQ=255)

                               tGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCa                                                            >  1:43286/1‑91 (MQ=255)

                                   tcAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTAt                                                        <  2:2398021/91‑1 (MQ=255)

                                    cAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATc                                                       <  1:3224115/91‑1 (MQ=255)

                                    cAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATc                                                       >  1:2061535/1‑91 (MQ=255)

                                    cAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATc                                                       >  1:1402052/1‑91 (MQ=255)

                                     aaaTTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCg                                                      <  1:1489882/91‑1 (MQ=255)

                                      aaTTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGc                                                     >  1:2217157/1‑91 (MQ=255)

                                         tAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGt                                                  <  1:3041879/91‑1 (MQ=255)

                                         tAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGt                                                  <  1:2053734/91‑1 (MQ=255)

                                         tAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGt                                                  >  1:2659627/1‑91 (MQ=255)

                                          aaaTCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTa                                                 >  2:352260/1‑91 (MQ=255)

                                            aTCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTaaa                                               >  2:350234/1‑91 (MQ=255)

                                            aTCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTaaa                                               >  2:1761847/1‑91 (MQ=255)

                                             tCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAg                                              >  1:46106/1‑91 (MQ=255)

                                              cACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGt                                             <  2:3260418/91‑1 (MQ=255)

                                              cACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGt                                             >  1:1323590/1‑91 (MQ=255)

                                                ccTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCg                                           >  2:1874388/1‑91 (MQ=255)

                                                 cTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGt                                          <  1:616692/91‑1 (MQ=255)

                                                 cTCAAGATGAGTTACATGGTTGATTAGATATGAATAACCTTCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGt                                          <  1:3615153/91‑1 (MQ=255)

                                                  tCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGtt                                         <  1:3175962/91‑1 (MQ=255)

                                                     atatGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTAc                                      <  2:2675807/91‑1 (MQ=255)

                                                        tGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTAccat                                   >  1:2532348/1‑89 (MQ=255)

                                                        tGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGt                                   >  2:1777851/1‑91 (MQ=255)

                                                        tGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGATTACCGt                                   >  2:3450317/1‑91 (MQ=255)

                                                          cgTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATCAAACTATCTACACCATTATCGCTGTAAAGTCGTTTCCCGTcc                                 >  2:133424/2‑90 (MQ=255)

                                                          aGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAACTAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCt                                 >  2:3486150/1‑91 (MQ=255)

                                                          aGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCt                                 >  1:1256773/1‑91 (MQ=255)

                                                          aGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCt                                 >  2:1434619/1‑91 (MQ=255)

                                                           gTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCtt                                <  1:101011/91‑1 (MQ=255)

                                                           gTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCtt                                <  2:3746412/91‑1 (MQ=255)

                                                            ttACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCttt                               <  1:1658657/91‑1 (MQ=255)

                                                             tACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCtttt                              >  1:1604248/1‑91 (MQ=255)

                                                             tACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCtttt                              >  2:3021370/1‑91 (MQ=255)

                                                             tACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCtttt                              <  2:1726012/91‑1 (MQ=255)

                                                                atggttattcatatcgaatcaaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCa                           >  1:833578‑M2/27‑91 (MQ=255)

                                                                atggttattcatatcgaatcaaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCa                           >  1:541130‑M2/27‑91 (MQ=255)

                                                                ATGGTTGATTCGATATGAATAACCATCTTCGTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCa                           >  2:2453925‑M1/1‑91 (MQ=255)

                                                                   gttattcatatcgaatcaaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAAt                        >  2:3682698‑M2/24‑91 (MQ=255)

                                                                   GTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAAt                        >  1:923577‑M1/1‑91 (MQ=255)

                                                                    TTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACAGTCTTTTGCAAAtt                       >  2:3295155‑M1/1‑91 (MQ=255)

                                                                     tattcatatcgaatcaaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGttt                                        >  1:325708‑M2/22‑73 (MQ=255)

                                                                      gATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTgg                     <  2:2281457/91‑1 (MQ=255)

                                                                       ttcatatcgaatcaaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGa                    >  2:1632422‑M2/20‑91 (MQ=255)

                                                                        ttCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaa                   >  2:564226/1‑91 (MQ=255)

                                                                          cGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaaaa                 <  1:3398144/91‑1 (MQ=255)

                                                                           gATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaaaaa                <  2:728438/91‑1 (MQ=255)

                                                                           gATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaaaaa                <  2:1604248/91‑1 (MQ=255)

                                                                           gATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaaaaa                >  2:2896343/1‑91 (MQ=255)

                                                                           gATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGaaaaa                >  1:3131264/1‑91 (MQ=255)

                                                                             tatGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaata              >  1:3864111/1‑91 (MQ=255)

                                                                               tGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaataaa            >  1:2620609/1‑91 (MQ=255)

                                                                               tGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaataaa            >  1:27517/1‑91 (MQ=255)

                                                                               tGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaataaa            <  2:1578699/91‑1 (MQ=255)

                                                                               tGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaataaa            >  1:672622/1‑91 (MQ=255)

                                                                                gAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAaaataaat           >  2:2163398/1‑91 (MQ=255)

                                                                                gAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTATTGAAAATTAAAAaaataaat           <  2:2583312/91‑1 (MQ=255)

                                                                                  aTAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAg         <  1:552232/91‑1 (MQ=255)

                                                                                  aTAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAg         <  1:3020830/91‑1 (MQ=255)

                                                                                   tAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAgg        <  1:1856394/91‑1 (MQ=255)

                                                                                   tAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAgg        <  1:2386926/91‑1 (MQ=255)

                                                                                   tAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAgg        <  2:2554584/91‑1 (MQ=255)

                                                                                   caaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAgg        >  1:2717259‑M2/8‑91 (MQ=255)

                                                                                    aaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAggg       >  1:3824410‑M2/7‑91 (MQ=255)

                                                                                    aaccatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAggg       <  2:1137589‑M2/85‑1 (MQ=255)

                                                                                     accatCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGt      <  2:802067‑M2/86‑1 (MQ=255)

                                                                                       catCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTaa    <  1:2989334‑M2/88‑1 (MQ=255)

                                                                                        atCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAAt   >  2:1655925‑M2/3‑91 (MQ=255)

                                                                                        atCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAAt   >  2:841382‑M2/3‑91 (MQ=255)

                                                                                         tCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGataata  >  2:3584303‑M2/2‑91 (MQ=255)

                                                                                         tCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATa  <  1:704969‑M2/90‑1 (MQ=255)

TACTTTTGCATCACAGATAATGCATTGCACTTGTCTCAAATTAAATCACCTCAATATGAGTTACATGGTTGATTCGATATGAATAACCATCTTCTTGATTGTAAATAAAACTATCTACACCATTATCGCTGTAAAGTCGTTTACCGTCTTTTGCAAATTGGAAAAATAAATAGGGTAATA  >  USA300TCH1516_ALE/1119850‑1120029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.