| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1183547 = | 196 (1.030) | 13 (0.080) | 10/140 | NT | 7.1% | intergenic (+58/+51) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | 1183585 = | 168 (1.010) | intergenic (+96/+13) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1183646‑1183547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGA > USA300TCH1516_ALE/1183585‑1183674 GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTT > 2:3457409/1‑91 AAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCCTAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCG > 2:2990182/1‑91 AAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCG < 2:2370733/91‑1 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT < 1:1578527/91‑1 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT > 2:665947/1‑91 CTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 2:2653959/91‑1 CTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 2:1777713/91‑1 CTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAG < 1:1669426/91‑1 TAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGT < 1:3343846/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGACACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:3418438/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG > 2:3004189/1‑91 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:100912/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:2102304/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG > 1:111453/1‑91 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:1952186/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:2709682/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 2:1865883/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT > 1:3514252/1‑91 AAAATATAGAGGGACANGATGTCTTATTGTNGAAACCATAAGATANTAATATTCGACNCTACNAGCATGAAAATGCATCTTTTCGTAGTGT > 1:1809478/1‑91 AAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC > 1:2150997/1‑91 AAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC > 2:1397481/1‑91 AAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC > 2:3544096/1‑91 TAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTC > 1:791951/1‑91 AATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTC > 1:2135960/1‑91 TCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGCCCCTCTATAT > 1:356585/1‑91 GACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTT > 1:3754566/1‑91 ACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCT > 2:3875338/1‑91 GAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTC > 1:1997205/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 1:1143174/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 1:1143290/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 1:245873/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:3295300/1‑91 GCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCCCAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCA > 2:2655739/1‑91 CATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCAC > 2:1131826/1‑91 AAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTG < 2:791951/91‑1 TCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTTTAAATCCATGAT < 1:2983745/91‑1 TCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGAT > 2:430416/1‑91 TCGTAGTGTCAAATATTATTATCTTATGTTTTCCACAATAAGACATCATGTCCCTCTATATTTTAAGCTCCCACACCTGAAAACCCATGAg < 2:2933284/91‑2 CGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATG > 2:3670169/1‑91 GTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGT > 2:3720316/1‑91 GTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGT > 2:3720267/1‑91 GTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGT < 1:3862801/91‑1 AGTGTCGTATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA < 1:1932290/91‑1 AGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA > 1:1567087/1‑91 AGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA > 1:1567301/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACATTAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA < 1:3299260/91‑1 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 1:151003/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA < 1:2172686/91‑1 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 2:2453970/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 1:3238364/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 1:3238300/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 1:3237474/1‑91 TGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAA < 2:2433075/91‑1 TGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAA < 2:2433217/91‑1 TGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAA < 2:1116741/91‑1 TGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAA < 2:2019529/91‑1 GTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAA > 1:726217/1‑91 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 2:2706042/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG > 2:2233538/1‑91 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 2:1539792/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 2:1373525/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 2:100796/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG > 1:734406/1‑91 TCGAATATTATTATCTTATGGTTTCCACAAGAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 2:2627524/91‑1 CGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGA < 1:1985810/91‑1 CGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGA > 1:1875049/1‑91 CGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGA > 1:1041727/1‑91 GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1183646‑1183547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGA > USA300TCH1516_ALE/1183585‑1183674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |