BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1183547 =	196 (1.030)	13 (0.080)	10/140	NT	7.1%	intergenic (+58/+51)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase
*	?	USA300TCH1516_ALE	1183585 =	168 (1.010)	13 (0.080)	10/140	NT	7.1%	intergenic (+96/+13)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase

Only 100 of 271 total aligned reads displayed.

ATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGAA  >  USA300TCH1516_ALE/1183495‑1183675

  aatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGaa                                                                                          <  1:1438421/91‑1 (MQ=255)

  aatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGaa                                                                                          <  2:1333103/91‑1 (MQ=255)

   atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat                                                                                         <  2:1907725/91‑1 (MQ=255)

    tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata                                                                                        <  2:327198/91‑1 (MQ=255)

     ttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAatat                                                                                       >  2:1562444/1‑91 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     <  1:531913/91‑1 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     <  2:3770210/91‑1 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     >  1:2096066/1‑91 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     >  2:1073696/1‑91 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     <  2:2800539/91‑1 (MQ=255)

        aaaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                                    <  2:2896422/91‑1 (MQ=255)

        aaaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                                    <  2:1440924/91‑1 (MQ=255)

        aaaaTGATTTAATTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattat                                                                                    <  2:223718/91‑1 (MQ=255)

         aaaTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattatt                                                                                   >  2:1128733/1‑91 (MQ=255)

           aTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattattat                                                                                 >  1:2265788/1‑91 (MQ=255)

             gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt                                                                               <  1:3513406/91‑1 (MQ=255)

               tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa                                                                             <  1:398285/91‑1 (MQ=255)

               tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa                                                                             >  2:3366971/1‑91 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            >  2:3100331/1‑91 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            <  1:894482/91‑1 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            <  1:2327264/91‑1 (MQ=255)

                  aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg                                                                          <  1:1641937/91‑1 (MQ=255)

                   cTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGt                                                                         <  1:3177245/91‑1 (MQ=255)

                    ttATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGtt                                                                        <  2:411900/91‑1 (MQ=255)

                     tataTTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGttt                                                                       <  2:2093241/91‑1 (MQ=255)

                     tataTTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGttt                                                                       >  1:3249305/1‑91 (MQ=255)

                     tataTTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGttt                                                                       >  1:2875524/1‑91 (MQ=255)

                      atatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTc                                                                      <  1:46146/91‑1 (MQ=255)

                      atatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTc                                                                      >  1:2019529/1‑91 (MQ=255)

                      atatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTc                                                                      <  1:2505488/91‑1 (MQ=255)

                       tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                                     <  2:941635/91‑1 (MQ=255)

                         ttAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcac                                                                   <  1:3418106/91‑1 (MQ=255)

                          tAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcaca                                                                  >  1:1397481/1‑91 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  2:1182310/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  1:3696697/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 >  2:242032/1‑91 (MQ=255)

                             cTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCGTTTTCATGCTCGTAGTGTCGAATATTCTTATCTTATGGTTTCCACAATa                                                               >  2:2949014/1‑91 (MQ=255)

                                 aGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAc                                                           >  1:2807997/1‑91 (MQ=255)

                                   aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                                         <  1:1983756/91‑1 (MQ=255)

                                   aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                                         <  2:1279519/91‑1 (MQ=255)

                                   aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                                         >  2:2131999/1‑91 (MQ=255)

                                   aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                                         <  2:729570/91‑1 (MQ=255)

                                      gTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatcat                                                      <  1:2331413/91‑1 (MQ=255)

                                      gTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatcat                                                      >  1:627607/1‑91 (MQ=255)

                                          ttGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTcc                                                  >  2:2526537/1‑91 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                <  2:1802952/91‑1 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                <  2:3013071/91‑1 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                <  1:2795462/91‑1 (MQ=255)

                                             tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               >  2:234081/1‑91 (MQ=255)

                                             tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               <  1:1198787/91‑1 (MQ=255)

                                             tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               <  2:1606695/91‑1 (MQ=255)

                                             tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               <  1:1007569/91‑1 (MQ=255)

                                             aatattcgacactacgagcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               >  1:2135960‑M2/46‑91 (MQ=255)

                                              aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct                                              <  1:2395074/91‑1 (MQ=255)

                                              aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct                                              >  2:2821876/1‑91 (MQ=255)

                                              aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct                                              <  2:3445326/91‑1 (MQ=255)

                                                aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat                                            >  2:1776706/1‑91 (MQ=255)

                                                aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat                                            >  1:1200217/1‑91 (MQ=255)

                                                 aaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtata                                           <  2:2694582/91‑1 (MQ=255)

                                                 aaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtata                                           <  1:300520/91‑1 (MQ=255)

                                                  tcgacactacgagcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGCCCCTCTatat                                          >  1:356585‑M2/41‑91 (MQ=255)

                                                  aaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTatat                                          <  2:645821/91‑1 (MQ=255)

                                                   aGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtt                                         <  1:2035867/91‑1 (MQ=255)

                                                   aGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtt                                         <  1:3435287/91‑1 (MQ=255)

                                                    GACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttt                                        >  2:1397481‑M1/1‑91 (MQ=255)

                                                    GACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttt                                        >  1:2150997‑M1/1‑91 (MQ=255)

                                                     ACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtttt                                       <  1:1952186‑M1/91‑1 (MQ=255)

                                                        CTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAg                                    <  2:2653959‑M1/91‑1 (MQ=255)

                                                        CTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAg                                    <  1:1669426‑M1/91‑1 (MQ=255)

                                                           CGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAGGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCtt                                 >  2:2990182‑M1/1‑91 (MQ=255)

                                                             agcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTcc                               >  1:1143174‑M2/30‑91 (MQ=255)

                                                               aaGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCcac                             <  1:1302363/91‑1 (MQ=255)

                                                                aGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCcaca                            <  1:3775351/91‑1 (MQ=255)

                                                                 gATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACAt                           <  1:2470605/91‑1 (MQ=255)

                                                                  aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc                          >  2:668445/1‑91 (MQ=255)

                                                                  aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc                          >  2:1488304/1‑91 (MQ=255)

                                                                    gCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTg                        <  2:2426163/91‑1 (MQ=255)

                                                                    gCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTg                        <  2:1845435/91‑1 (MQ=255)

                                                                    gCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTg                        <  1:2574532/91‑1 (MQ=255)

                                                                     cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt                       <  1:2690313/91‑1 (MQ=255)

                                                                      aTTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTa                      >  1:1824265/1‑91 (MQ=255)

                                                                       ttttCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTaa                     >  1:1833603/1‑91 (MQ=255)

                                                                       ttttCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTaa                     >  2:2444771/1‑91 (MQ=255)

                                                                       ttttCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTaa                     >  1:2251143/1‑91 (MQ=255)

                                                                           cATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATcc                 >  1:841630/1‑91 (MQ=255)

                                                                            aTGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCa                >  1:1705230/1‑91 (MQ=255)

                                                                               cTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatga             >  2:848278/1‑91 (MQ=255)

                                                                               cTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatga             >  2:776781/1‑91 (MQ=255)

                                                                                tcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTTTAAATCCatgat            <  1:2983745‑M2/81‑1 (MQ=255)

                                                                                 cgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatgatg           >  2:3670169‑M2/10‑91 (MQ=255)

                                                                                  gtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGt          >  2:3720316‑M2/9‑91 (MQ=255)

                                                                                    agtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTaa        >  1:1567301‑M2/7‑91 (MQ=255)

                                                                                     gtgtcGAATATTATTATCTTATGGTTTCCACATTAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTaaa       <  1:3299260‑M2/86‑1 (MQ=255)

                                                                                     gtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTaaa       >  1:3238300‑M2/6‑91 (MQ=255)

                                                                                        tcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAg    >  1:734406‑M2/3‑91 (MQ=255)

                                                                                        tcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAg    <  2:100796‑M2/89‑1 (MQ=255)

                                                                                         cGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGa   >  1:1875049‑M2/2‑91 (MQ=255)

                                                                                         cGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGa   >  1:1041727‑M2/2‑91 (MQ=255)

                                                                                          gAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGaa  <  2:3499065/91‑1 (MQ=255)

                                                                                          gAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGaa  >  2:753509/1‑91 (MQ=255)

ATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGAA  >  USA300TCH1516_ALE/1183495‑1183675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.