| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1242672 | 149 (0.780) | 13 (0.080) | 8/138 | NT | 8.5% | coding (110/987 nt) | plsX | Phosphate acyltransferase |
| ? | USA300TCH1516_ALE | = 1242683 | 151 (0.920) | coding (121/987 nt) | plsX | Phosphate acyltransferase | |||||
TAGCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1242573‑1242672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attata‑cttttTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC < USA300TCH1516_ALE/1242683‑1242594 TAGCACTTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAAT < 2:1431288/91‑1TAGCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAGGGCTGTTGAAGACTTTAAAGATATAGAAAT > 1:1937831/1‑91TAGCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAAT < 2:3044642/91‑1TAGCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAAT < 1:85208/91‑1 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA > 1:108421/1‑91 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA > 2:367462/1‑91 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA < 2:2867130/91‑1 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA < 2:1844751/91‑1 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA < 2:180291/91‑1 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA < 2:177955/91‑1 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTA > 1:3399447/1‑91 GCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTCTAAAGATCTAGAAATTA > 2:367432/1‑91 CAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTAT < 2:2164156/91‑1 AATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGCAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA < 1:3075995/91‑1 TTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CT > 1:3584484/1‑91 TTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CT < 2:2293557/91‑1 TTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CT > 1:3094717/1‑91 TGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTT > 2:1089285/1‑91 TGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTT > 1:2472402/1‑91 TGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTT < 1:38250/91‑1 TGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTT < 1:38747/91‑1 ATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTT < 2:2531342/91‑1 ATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTT < 2:3152780/91‑1 TATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTa > 1:3345704/1‑90 aAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑C‑‑‑TTTTCGTCACCGAAAAGTAT < 1:1492127/90‑1 CAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑C‑‑‑TTTTCGTCACCGAAAAGTAT < 1:1085589/91‑1 ATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTA < 2:1928435/91‑1 TGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACCTTTTTTTCGTCACCGAAAAGTA < 2:1700300/91‑1 TGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTAT < 1:2067503/91‑1 TGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTAT < 1:91406/91‑1 CGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAA < 1:1596098/91‑1 CCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATT < 1:2325886/91‑1 ATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTA < 1:2036055/91‑1 TATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAG < 1:1046066/91‑1 TATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTATTACGTCAACGAAAAGTATAATTTCTAG < 2:3647370/91‑1 ATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGTAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGA < 1:3361379/91‑1 TCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGAT < 1:3809811/91‑1 ATTATA‑CTTTTTTTTTTCACCTAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGC > 2:3033194/1‑91 ATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGt > 2:2824020/1‑90 ATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGC < 1:1899018/91‑1 ATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGC > 2:1591552/1‑91 ATTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGC > 2:1638674/1‑91 TTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCG < 2:2537368/91‑1 TTATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCG < 1:2186386/91‑1 TATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGC > 1:1328745/1‑91 TATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGC < 2:2569258/91‑1 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCA > 2:3818207/1‑91 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCA > 1:2957651/1‑91 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCA < 1:453805/91‑1 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCA > 2:2326619/1‑91 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCA > 1:3154905/1‑91 ATA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTGGAAAGTCTGCAACAGCCTTGTGTACGGCTTCTAATACGAGATCAGGCGCA < 2:1746021/91‑1 TA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGaca < 1:78962/91‑4 TA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCAT < 1:2153822/91‑1 TA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCAT < 2:3078730/91‑1 TA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCAT > 1:3394162/1‑91 TA‑CTTTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCAT > 2:2809671/1‑91 TTTTTTTTTTACTGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTt > 2:1652621/1‑90 TTTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTC > 1:3591275/1‑91 cTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTCAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 2:3843414/90‑1 cTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 2:3844699/90‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 2:1879348/91‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 2:1879338/91‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 1:272911/91‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 1:2498422/91‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCG < 2:148309/91‑1 TTTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACAATATCAGGCGCATTGTCG > 1:141768/1‑91 TTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC < 1:3537012/91‑1 TTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC > 1:2923285/1‑91 TTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC > 1:2923028/1‑91 TTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC > 2:3629378/1‑91 TAGCAATTGATATGATGGGTGGCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATA‑CTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1242573‑1242672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attata‑cttttTTTCGTCACCGAAAAGTATAATTTCTAGATCTTTAAAGTCTTCAACAGCCTTTTGTACGGCTTCTAATACGATATCAGGCGCATTGTCGC < USA300TCH1516_ALE/1242683‑1242594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |