New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1242672149 (0.780)13 (0.080) 8/138 NT 8.5% coding (110/987 nt) plsX Phosphate acyltransferase
?USA300TCH1516_ALE = 1242683 151 (0.920)coding (121/987 nt) plsX Phosphate acyltransferase

Only 100 of 207 total aligned reads displayed.

GCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCGATTAAA  >  USA300TCH1516_ALE/1242594‑1242772
                                                                                         |                                                                                         
gCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAa                                                                                          >  1:2923285‑M2/1‑90 (MQ=255)
 cGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAag                                                                                         <  2:3844699‑M2/91‑3 (MQ=255)
 cGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaa                                                                                         <  1:272911‑M2/91‑3 (MQ=255)
 cGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaa                                                                                         <  2:1879348‑M2/91‑3 (MQ=255)
      aTGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagta                                                                                    >  2:2809671‑M2/1‑84 (MQ=255)
      aTGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagta                                                                                    <  1:2153822‑M2/91‑8 (MQ=255)
       tGCGCCTGATCTCGTATTAGAAGCCGTACACAAGGCTGTTGCAGACTTTCCAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtat                                                                                   <  2:1746021‑M2/91‑9 (MQ=255)
       tGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtat                                                                                   >  2:2326619‑M2/1‑83 (MQ=255)
       tGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtat                                                                                   <  1:453805‑M2/91‑9 (MQ=255)
        gcgcCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtata                                                                                  <  2:2569258‑M2/91‑10 (MQ=255)
        gcgcCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtata                                                                                  >  1:1328745‑M2/1‑82 (MQ=255)
          gcCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtataat                                                                                >  2:1638674‑M2/1‑80 (MQ=255)
          gcCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTAGGTGAAAAAAaaaagtataat                                                                                >  2:3033194‑M2/1‑80 (MQ=255)
          acctGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAaaaagtataat                                                                                >  2:2824020‑M2/2‑80 (MQ=255)
           ccTGCTATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATc                                                                               <  1:3233544/91‑1 (MQ=255)
            cTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCt                                                                              >  2:1587590/1‑91 (MQ=255)
            cTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCt                                                                              >  1:3679962/1‑91 (MQ=255)
                 atCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAAcc                                                                         >  1:563420/1‑91 (MQ=255)
                  tCGTATTAGAAGTCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCa                                                                        >  1:2973550/1‑91 (MQ=255)
                  tCGTATTAGAAGTCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCa                                                                        >  1:2974651/1‑91 (MQ=255)
                  tCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCa                                                                        >  2:851296/1‑91 (MQ=255)
                  tCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAACATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCa                                                                        >  2:2942608/1‑91 (MQ=255)
                   cGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCAt                                                                       >  1:1200100/1‑91 (MQ=255)
                   cGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCAt                                                                       <  2:3873753/91‑1 (MQ=255)
                    gTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATg                                                                      <  2:2049830/91‑1 (MQ=255)
                      aTTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGaa                                                                    <  1:266506/91‑1 (MQ=255)
                       ttAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAc                                                                   >  2:3561593/1‑91 (MQ=255)
                       ttAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAc                                                                   <  1:2425387/91‑1 (MQ=255)
                       ttAGAAGCCGTACAAAAGGCTGTTGAAGACTATAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAc                                                                   >  1:3403312/1‑91 (MQ=255)
                        tAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcg                                                                  <  1:169223/91‑1 (MQ=255)
                         aGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcga                                                                 >  1:3150094/1‑91 (MQ=255)
                           aaGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaat                                                               >  2:10340/1‑91 (MQ=255)
                            aGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaatc                                                              >  2:2149303/1‑91 (MQ=255)
                            aGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaatc                                                              <  2:2736985/91‑1 (MQ=255)
                              ccGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaatcga                                                            <  1:2199202/91‑1 (MQ=255)
                              ccGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaatcga                                                            <  1:991334/91‑1 (MQ=255)
                              ccGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAAcgaatcga                                                            >  1:1276697/1‑91 (MQ=255)
                                  aCAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAAttt                                                        >  1:3578879/1‑91 (MQ=255)
                                   cAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTAAAGAAAAGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTa                                                       <  2:1682077/91‑1 (MQ=255)
                                    aaaaGGCTGTTAAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAg                                                      <  1:1142085/91‑1 (MQ=255)
                                     aaaGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGa                                                     >  2:1830723/1‑91 (MQ=255)
                                       aGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACa                                                   >  2:1477013/1‑91 (MQ=255)
                                       aGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACa                                                   >  2:3830157/1‑91 (MQ=255)
                                       aGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACa                                                   >  1:2576583/1‑91 (MQ=255)
                                         gCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACAtt                                                 >  1:1137339/1‑91 (MQ=255)
                                         gCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACAtt                                                 >  1:1081620/1‑91 (MQ=255)
                                          cTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTAAAGAAAAAAAAAAAAGTATAATCTGAAGCATGAACGAATCGAATTTAGACATTg                                                <  2:2212912/91‑1 (MQ=255)
                                           tGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGt                                               >  1:3861993/1‑91 (MQ=255)
                                           tGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGt                                               >  1:2907478/1‑91 (MQ=255)
                                             ttGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTc                                             >  1:1404469/1‑91 (MQ=255)
                                              tGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCt                                            <  2:1674478/91‑1 (MQ=255)
                                              tGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCt                                            <  2:1372715/91‑1 (MQ=255)
                                               gAAGATTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTg                                           <  2:3585021/91‑1 (MQ=255)
                                                  gACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGaaa                                        <  1:848446/91‑1 (MQ=255)
                                                  gACTTTAAAGATATAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGaaa                                        >  1:3001120/1‑91 (MQ=255)
                                                   aCTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGaaaa                                       <  1:3539528/91‑1 (MQ=255)
                                                   aCTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGaaaa                                       >  1:1989076/1‑91 (MQ=255)
                                                    cTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAg                                      <  1:1073530/91‑1 (MQ=255)
                                                    cTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAg                                      >  2:630952/1‑91 (MQ=255)
                                                     tttAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGa                                     >  2:517697/1‑91 (MQ=255)
                                                      ttAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGAt                                    >  1:1037343/1‑91 (MQ=255)
                                                      ttAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGAt                                    >  2:3613438/1‑91 (MQ=255)
                                                        aaaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTg                                  >  1:515932/1‑91 (MQ=255)
                                                        aaaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTg                                  <  2:3521614/91‑1 (MQ=255)
                                                         aaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGa                                 >  1:1045081/1‑91 (MQ=255)
                                                         aaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGa                                 >  1:2757150/1‑91 (MQ=255)
                                                         aaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGa                                 >  1:1570992/1‑91 (MQ=255)
                                                         aaGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACAATGTTCTTAATAGAttca                                 >  2:1911637/1‑89 (MQ=255)
                                                          aGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGaa                                <  2:1471953/91‑1 (MQ=255)
                                                          aGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGaa                                <  1:844529/91‑1 (MQ=255)
                                                           gATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGaaa                               <  2:1652305/91‑1 (MQ=255)
                                                             tCTAGAAATTATACTTTTCGGTGACGAAAaaaagtataattactagatctttaaagtcttcaacagccttttgtacggcttctaatacgat                             <  1:3361379‑M2/91‑63 (MQ=255)
                                                              cTAGAAATTATACTTTTCGTTGACGTAAtaaagtataatttctagatctttaaagtcttcaacagccttttgtacggcttctaatacgata                            <  2:3647370‑M2/91‑64 (MQ=255)
                                                              cTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATgg                            <  2:141553/91‑1 (MQ=255)
                                                               tAGAAATTATACTTTTCGGTGACGAAAaaaagtataatttctagatctttaaagtcttcaacagccttttgtacggcttctaatacgatat                           <  1:2036055‑M2/91‑65 (MQ=255)
                                                                   aaTTATACTTTTCGGTGACGAAAaaaagtataatttctagatctttaaagtcttcaacagccttttgtacggcttctaatacgatatcagg                       <  1:2325886‑M2/91‑69 (MQ=255)
                                                                     ttATACTTTTCGGTGACGAAAaaaagtataatttctagatctttaaagtcttcaacagccttttgtacggcttctaatacgatatcaggcg                     <  1:1596098‑M2/91‑71 (MQ=255)
                                                                     ttATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGa                     >  1:2366149/1‑91 (MQ=255)
                                                                      tataCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAg                    >  2:3241773/1‑91 (MQ=255)
                                                                       ataCTTTTCGGTGACGAAAaaaagtataatttctagatctttaaagtcttcaacagccttttgtacggcttctaatacgatatcaggcgca                   <  1:91406‑M2/91‑73 (MQ=255)
                                                                       ataCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGc                   <  2:1505342/91‑1 (MQ=255)
                                                                       ataCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGc                   >  1:2911257/1‑91 (MQ=255)
                                                                       ataCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGc                   >  1:3310998/1‑91 (MQ=255)
                                                                       ataCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGc                   <  1:748127/91‑1 (MQ=255)
                                                                        taCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGcc                  <  1:378019/91‑1 (MQ=255)
                                                                         aCTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGCACGAATCGACTTTCGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGACt                 >  1:593219/1‑91 (MQ=255)
                                                                          cTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTg                >  1:2130847/1‑91 (MQ=255)
                                                                          cTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTg                <  1:3155928/91‑1 (MQ=255)
                                                                          cTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTg                >  2:2029917/1‑91 (MQ=255)
                                                                           ttttCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGt               <  1:3201670/91‑1 (MQ=255)
                                                                           ttttCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGt               <  2:1163773/91‑1 (MQ=255)
                                                                              tCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTag            >  2:3080212/1‑91 (MQ=255)
                                                                                ggTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTagag          <  1:1472572/91‑1 (MQ=255)
                                                                                ggTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTagag          <  2:2068562/91‑1 (MQ=255)
                                                                                 gTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGc         >  2:3753178/1‑91 (MQ=255)
                                                                                 gTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGc         >  2:2387572/1‑91 (MQ=255)
                                                                                  tGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCg        <  1:1863517/91‑1 (MQ=255)
                                                                                   accGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCGa       >  1:15254/3‑91 (MQ=255)
                                                                                    aCGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCGAt      >  1:2483702/1‑91 (MQ=255)
                                                                                        aaaaaaGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCGATTaaa  >  1:2508208/1‑91 (MQ=255)
                                                                                         |                                                                                         
GCGACAATGCGCCTGATATCGTATTAGAAGCCGTACAAAAGGCTGTTGAAGACTTTAAAGATCTAGAAATTATACTTTTCGGTGACGAAAAAAAGTATAATCTGAACCATGAACGAATCGAATTTAGACATTGTTCTGAAAAGATTGAAATGGAAGATGAGCCTGTTAGAGCGATTAAA  >  USA300TCH1516_ALE/1242594‑1242772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.