| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1262900 = | 146 (0.770) | 13 (0.080) | 7/140 | NT | 9.1% | intergenic (+25/‑202) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN |
| ? | USA300TCH1516_ALE | 1262943 = | 132 (0.790) | intergenic (+68/‑159) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN | |||||
ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262999‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA > USA300TCH1516_ALE/1262943‑1263032 ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGA < 2:2521134/91‑1ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGA < 1:2819948/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTTAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA > 1:3260405/1‑91 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA < 1:1816326/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAAT < 1:1374342/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA > 1:472840/1‑90 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAA < 2:472840/90‑1 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATG > 2:756036/1‑91 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATG > 2:850764/1‑91 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATG > 1:3802204/1‑91 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATG > 1:3802239/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:2300112/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG < 1:822829/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:2080548/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:2300064/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:2081544/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:1305893/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGG > 1:2080558/1‑91 TAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGG < 2:3662256/91‑1 TAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGG < 2:3661971/91‑1 TAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGG > 1:3251315/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC > 1:84575/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC > 1:3842560/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGC < 1:3397811/91‑1 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCT < 2:1008689/91‑1 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCT > 1:3161365/1‑91 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCT < 1:3835983/91‑1 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCT > 1:1519003/1‑91 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTA < 2:1303041/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTA < 2:2885463/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTA > 1:955007/1‑91 TTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT < 2:3242467/91‑1 TTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT > 1:2300916/1‑91 CCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACAATTTTCATATTTTGGAAAGACAAGTTA > 2:255733/1‑91 ATTTCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATT > 1:754626/1‑91 TTCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAT > 2:1526196/1‑91 TTCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAT > 1:1065261/1‑91 TCCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATT > 1:3392832/1‑91 CCGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTT > 2:2900390/1‑91 CGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 2:822050/1‑91 CGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 1:994016/1‑91 CGATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 2:2681948/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:3763548/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:137722/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:3721/1‑91 GATACTTTTATAAAGTATGGAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:3183537/1‑91 AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTATAATAGCTTTATA < 1:2977202/91‑1 AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATA > 2:998191/1‑91 TGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAA > 2:2195451/1‑91 TGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAA > 2:462427/1‑91 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC > 1:2826336/1‑91 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC > 1:2968292/1‑91 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC > 2:1559569/1‑91 GCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACA > 1:2395622/1‑91 CTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAA > 2:3238292/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 2:3099941/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA < 1:3577097/91‑1 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 2:1533986/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA < 1:3349704/91‑1 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:2812455/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 2:756847/1‑91 ATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAG < 2:1065261/91‑1 ATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAG < 1:1015872/91‑1 TTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA < 1:496907/91‑1 TTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA > 1:858325/1‑91 ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTATAAAGTATGGAATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262999‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA > USA300TCH1516_ALE/1262943‑1263032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |