BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1262900 =	146 (0.770)	13 (0.080)	7/140	NT	9.1%	intergenic (+25/‑202)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN
*	?	USA300TCH1516_ALE	1262943 =	132 (0.790)	13 (0.080)	7/140	NT	9.1%	intergenic (+68/‑159)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN

Only 100 of 215 total aligned reads displayed.

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA  >  USA300TCH1516_ALE/1262853‑1263033

cATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAtt                                                                                            >  2:3136228/1‑91 (MQ=255)

   tattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGt                                                                                         >  2:2536731/1‑91 (MQ=255)

   tattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGt                                                                                         >  1:2260842/1‑91 (MQ=255)

       aaCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTg                                                                                     >  2:84575/1‑91 (MQ=255)

       aaCTGTTAAGAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATGTGTCGTg                                                                                     >  1:1952539/1‑91 (MQ=255)

        aCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTGGTGc                                                                                    <  1:3069623/91‑1 (MQ=255)

        aCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGc                                                                                    >  2:902849/1‑91 (MQ=255)

        aCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGc                                                                                    <  1:775944/91‑1 (MQ=255)

         cTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCg                                                                                   >  1:3801678/1‑91 (MQ=255)

         cTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCg                                                                                   <  1:943797/91‑1 (MQ=255)

          tgtgAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                  <  1:3749240/91‑1 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                  >  2:684421/1‑91 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                  <  1:3163495/91‑1 (MQ=255)

            ttAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATg                                                                                <  2:1217066/91‑1 (MQ=255)

             taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa                                                                               >  2:989923/1‑91 (MQ=255)

              aataaataAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGaa                                                                              >  2:1811513/1‑91 (MQ=255)

              aataaataAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGaa                                                                              >  1:2329103/1‑91 (MQ=255)

                 aaataaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAttt                                                                           >  1:26278/1‑91 (MQ=255)

                   ataaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTa                                                                         <  2:1747790/91‑1 (MQ=255)

                    taaaGTTGAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAg                                                                        <  2:3446603/91‑1 (MQ=255)

                     aaaGTTAAAAGATGCTATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATTGGGAATGGGCTATTTGTCGTGCGATGCATTTTAGt                                                                       >  2:182772/1‑91 (MQ=255)

                     aaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                       >  2:2466645/1‑91 (MQ=255)

                     aaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                       <  1:1076934/91‑1 (MQ=255)

                      aaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTa                                                                      >  1:2123766/1‑91 (MQ=255)

                      aaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTa                                                                      <  2:2375372/91‑1 (MQ=255)

                      aaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTa                                                                      <  2:2640656/91‑1 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                     >  2:1903175/1‑91 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                     >  2:3309116/1‑91 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGc                                                                                    <  1:857401/75‑1 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGc                                                                                    >  2:857401/1‑75 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca                                                                    >  2:794348/1‑91 (MQ=255)

                          tAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACt                                                                  <  2:3659027/91‑1 (MQ=255)

                          tAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACt                                                                  <  1:1958831/91‑1 (MQ=255)

                           aaaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtt                                                                 >  2:2915966/1‑91 (MQ=255)

                            aaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt                                                                <  1:1325888/91‑1 (MQ=255)

                              aGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc                                                              <  1:2735739/91‑1 (MQ=255)

                               gatgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCa                                                             <  2:1131782/91‑1 (MQ=255)

                                atgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                       >  2:2255710/1‑80 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                           >  2:1889543/1‑91 (MQ=255)

                                      taAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTg                                                      <  1:3637239/91‑1 (MQ=255)

                                      taAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTg                                                      <  2:1005767/91‑1 (MQ=255)

                                      taAATGGCTATAGCCCATTCCATACTTTATAAAAGTACCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTg                                                      >  1:3259873/1‑91 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa                                                    >  1:2030609/1‑91 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa                                                    >  2:1179570/1‑91 (MQ=255)

                                        aaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa                                                    >  1:900210/1‑91 (MQ=255)

                                         aTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGaa                                                   >  1:2361659/1‑91 (MQ=255)

                                           ggCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTa                                                                      <  2:399975/70‑1 (MQ=255)

                                           ggCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTa                                                                      >  1:399975/1‑70 (MQ=255)

                                             cTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGAc                                               <  1:644962/91‑1 (MQ=255)

                                              tataGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACa                                              <  2:1339335/91‑1 (MQ=255)

                                               ATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACaa                                             <  2:3242467‑M1/91‑1 (MQ=255)

                                                TAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAg                                            <  2:2885463‑M1/91‑1 (MQ=255)

                                                 AGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt                                           >  1:1519003‑M1/1‑91 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          <  1:3397811‑M1/91‑1 (MQ=255)

                                                  GCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt                                          >  1:3842560‑M1/1‑91 (MQ=255)

                                                   CCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTa                                         >  1:3251315‑M1/1‑91 (MQ=255)

                                                   CCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTa                                         <  2:3662256‑M1/91‑1 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                        <  1:822829‑M1/91‑1 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                        >  1:2081544‑M1/1‑91 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                        >  1:2080548‑M1/1‑91 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                        >  1:2300112‑M1/1‑91 (MQ=255)

                                                     CATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAat                                       >  1:3802239‑M1/1‑91 (MQ=255)

                                                      ATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                      <  1:1374342‑M1/91‑1 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                      <  2:472840‑M1/90‑1 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                      >  1:472840‑M1/1‑90 (MQ=255)

                                                         ccATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattatt                                   >  1:1427028/1‑91 (MQ=255)

                                                         ccATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattatt                                   >  1:978646/1‑91 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                  <  2:236822/91‑1 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                  <  2:1648360/91‑1 (MQ=255)

                                                          cATACTGTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTTGAAAGACAAGTTAATTAttt                                  <  2:237166/91‑1 (MQ=255)

                                                           cgatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAtttt                                 >  2:2681948‑M2/32‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                                >  2:3183537‑M2/31‑91 (MQ=255)

                                                             aCTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAc                               >  2:3208088/1‑91 (MQ=255)

                                                              cTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcc                              <  2:1257957/91‑1 (MQ=255)

                                                               tttATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcct                             <  1:416194/91‑1 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                        >  1:2223670/1‑91 (MQ=255)

                                                                     aaaGTATCGGAAATGGGCTATTTGTCGTGCGTTGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACa                       <  1:689771/91‑1 (MQ=255)

                                                                     aaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACa                       >  2:2273286/1‑91 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                      <  2:2171148/91‑1 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                      >  2:2791538/1‑91 (MQ=255)

                                                                        gTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATa                    >  1:1273811/1‑91 (MQ=255)

                                                                            cGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCtt                <  1:1654138/91‑1 (MQ=255)

                                                                            cGGAAACGGGCTATTTGTCGTTCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACTTCCTACAATAGcct                >  2:3581717/1‑89 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt               <  2:2123830/91‑1 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt               >  2:3339432/1‑91 (MQ=255)

                                                                              gAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAAt                     >  1:326687/1‑84 (MQ=255)

                                                                              gAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTta              <  2:1477174/91‑1 (MQ=255)

                                                                              gAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTta              <  1:749396/91‑1 (MQ=255)

                                                                                    ggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAc        >  1:2968292‑M2/7‑91 (MQ=255)

                                                                                    ggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAc        >  1:2826336‑M2/7‑91 (MQ=255)

                                                                                     gctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACa       >  1:2395622‑M2/6‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  2:3099941‑M2/4‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  2:1533986‑M2/4‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  2:756847‑M2/4‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     <  1:3577097‑M2/88‑1 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     <  1:3349704‑M2/88‑1 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa     >  1:2812455‑M2/4‑91 (MQ=255)

                                                                                        atTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAg    <  2:1065261‑M2/89‑1 (MQ=255)

                                                                                        atTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAg    <  1:1015872‑M2/89‑1 (MQ=255)

                                                                                         tTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGa   <  1:496907‑M2/90‑1 (MQ=255)

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGAA  >  USA300TCH1516_ALE/1262853‑1263033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.