| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1267714 | 156 (0.820) | 13 (0.070) | 9/150 | NT | 7.6% | coding (1004/2076 nt) | topA | DNA topoisomerase 1 |
| ? | USA300TCH1516_ALE | = 1267733 | 170 (0.950) | coding (1023/2076 nt) | topA | DNA topoisomerase 1 | |||||
GATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1267620‑1267714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC < USA300TCH1516_ALE/1267733‑1267644 GATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAG > 2:115152/1‑91GATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAG > 1:2066042/1‑91 ATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGC > 1:624004/1‑91 ATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGC > 2:567492/1‑91 ATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGC > 1:2474781/1‑91 TTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCA < 1:708371/91‑1 TTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCA > 1:2188245/1‑91 TTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCA > 1:2189924/1‑91 TTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCA > 2:3518857/1‑91 TCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCAT > 2:2322848/1‑91 TCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCAT < 1:240165/91‑1 CTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATC > 2:405993/1‑91 TCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTT > 1:441760/1‑91 GATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTT < 1:2933094/91‑1 GCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTG < 2:3133330/91‑1 GCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTG < 2:3133341/91‑1 GCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTG < 1:1303763/91‑1 CCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGA < 1:2554839/91‑1 CCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGA < 1:2557423/91‑1 CAAAGTTGAAGCAAAACAGTATATAACTGATGAATACGGTGAATATTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGAT < 1:3103239/91‑1 CAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGAT < 1:1794538/91‑1 AAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGATGC < 1:1305861/91‑1 AGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGATGCT < 2:213561/91‑1 TGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGATGCTTTA < 1:457055/91‑1 ACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAA < 2:3428835/91‑1 GCATCTTGGTCACCTTGTTTCCCTGATGCTTTATGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTT > 2:1459707/1‑91 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT > 2:3397046/1‑91 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT > 2:2520609/1‑91 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT < 1:1806286/91‑1 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT < 2:161273/91‑1 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT > 1:2633/1‑91 CATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTT < 1:2009409/91‑1 ATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCATTTATATACTGTTTTGCTTCAACTTTG < 2:2028680/91‑1 ATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCATTTATATACTGTTTTGCTTCAACTTTG < 2:2026631/91‑1 ATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCATTTATATACTGTTTTGCTTCAACTTTG < 2:2025850/91‑1 ATCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTG < 1:436755/91‑1 TCTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGG < 2:1297819/91‑1 CTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC > 2:2066011/1‑91 CTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC > 1:1533929/1‑91 CTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC < 1:49840/91‑1 CTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC > 2:56446/1‑91 GATTCTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1267620‑1267714‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcTTGGTCACCTTGTTTCCCTGATGCTTTACGTTTAGAAGTGTAAGATTCACCGTATTTATCAGTTATATACTGTTTTGCTTCAACTTTGGC < USA300TCH1516_ALE/1267733‑1267644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |