BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1267714	156 (0.820)	13 (0.070)	9/150	NT	7.6%	coding (1004/2076 nt)	topA	DNA topoisomerase 1
*	?	USA300TCH1516_ALE	= 1267733	170 (0.950)	13 (0.070)	9/150	NT	7.6%	coding (1023/2076 nt)	topA	DNA topoisomerase 1

Only 100 of 221 total aligned reads displayed.

GCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGATTATAC  >  USA300TCH1516_ALE/1267644‑1267823

gCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAg                                                                                           >  2:56446‑M2/1‑90 (MQ=255)

gCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAg                                                                                           >  2:2066011‑M2/1‑90 (MQ=255)

gCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAg                                                                                           <  1:49840‑M2/91‑2 (MQ=255)

  cAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgat                                                                                         <  1:436755‑M2/91‑4 (MQ=255)

  cAAAGTTGAAGCAAAACAGTATATAAATGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgat                                                                                         <  2:2025850‑M2/91‑4 (MQ=255)

   aaaGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgatg                                                                                        >  1:2633‑M2/1‑87 (MQ=255)

     aGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGcc                                                                                      <  1:1258663/91‑1 (MQ=255)

      gTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGccc                                                                                     >  1:2460627/1‑91 (MQ=255)

       ttGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa                                                                                    <  2:3852585/91‑1 (MQ=255)

       ttGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa                                                                                    <  2:3176099/91‑1 (MQ=255)

        tGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCAt                                                                                   <  1:2800485/91‑1 (MQ=255)

         gAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATg                                                                                  >  1:872897/1‑91 (MQ=255)

         gAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATg                                                                                  <  2:1969806/91‑1 (MQ=255)

          aaGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGa                                                                                 >  1:851771/1‑91 (MQ=255)

           aGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAg                                                                                <  1:1873950/91‑1 (MQ=255)

               aaaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTa                                                                            <  2:2178099/91‑1 (MQ=255)

               aaaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTa                                                                            >  1:2451472/1‑91 (MQ=255)

               aaaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACATAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTa                                                                            >  1:1114459/1‑91 (MQ=255)

                aaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTAt                                                                           >  2:3330245/1‑91 (MQ=255)

                aaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTAt                                                                           >  2:3329339/1‑91 (MQ=255)

                 aCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTAtt                                                                          <  1:2705206/91‑1 (MQ=255)

                   aGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAg                                                                        <  2:739069/91‑1 (MQ=255)

                   aGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAg                                                                        <  2:3473805/91‑1 (MQ=255)

                    gTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGa                                                                       >  2:1447180/1‑91 (MQ=255)

                    gTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCGATTAGa                                                                       <  1:3014946/91‑1 (MQ=255)

                     tatataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAc                                                                      >  1:856711/1‑91 (MQ=255)

                     tatataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAc                                                                      <  1:3557619/91‑1 (MQ=255)

                     tatataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAc                                                                      <  1:1929504/91‑1 (MQ=255)

                      atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa                                                                                    >  1:2578941/1‑76 (MQ=255)

                      atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa                                                                                    <  2:47136/76‑1 (MQ=255)

                      atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAcc                                                                     >  2:2573627/1‑91 (MQ=255)

                        ataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCtt                                                                   <  2:2145606/91‑1 (MQ=255)

                         taACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTc                                                                  >  2:1267306/1‑91 (MQ=255)

                         taACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTc                                                                  <  2:3673856/91‑1 (MQ=255)

                              gATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTa                                                             >  2:2615662/1‑91 (MQ=255)

                               aTAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTAc                                                            <  1:1461545/91‑1 (MQ=255)

                                   aTACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATg                                                        >  2:2133428/1‑91 (MQ=255)

                                     atggTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGACCATGAGGCTATTAGACCTTCAAGTACTATGCg                                                      >  1:649533/3‑91 (MQ=255)

                                          gAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGc                                                 >  2:3734481/1‑91 (MQ=255)

                                           aaTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGcc                                                >  2:2913616/1‑91 (MQ=255)

                                           aaTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGcc                                                >  2:3554521/1‑91 (MQ=255)

                                            aTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCa                                               >  2:1421120/1‑91 (MQ=255)

                                            aTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCa                                               >  1:1816661/1‑91 (MQ=255)

                                            aTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCa                                               >  1:201244/1‑91 (MQ=255)

                                              cTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAga                                             <  1:2816983/91‑1 (MQ=255)

                                               ttACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgat                                            >  1:1225143/1‑91 (MQ=255)

                                               ttACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgat                                            >  2:3539999/1‑91 (MQ=255)

                                                 acacTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgctga                                          >  1:3491346/1‑91 (MQ=255)

                                                 acacTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgatga                                          <  2:815697/91‑1 (MQ=255)

                                                  cacTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgatgat                                         >  1:2522250/1‑91 (MQ=255)

                                                    cTTCTAAACGTAAAGCATCAGGGAAACAAGGTGTCCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGatat                                       <  1:3449707/91‑1 (MQ=255)

                                                    cTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGatat                                       >  2:3006273/1‑91 (MQ=255)

                                                     ttCTAAACATAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATg                                      <  2:1114459/91‑1 (MQ=255)

                                                      tCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGa                                     <  1:3734481/91‑1 (MQ=255)

                                                      tCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGa                                     <  1:2913616/91‑1 (MQ=255)

                                                         aaaCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGt                                  <  1:1382241/91‑1 (MQ=255)

                                                          aaCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTc                                 >  2:692278/1‑91 (MQ=255)

                                                          aaCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTc                                 <  1:1893039/91‑1 (MQ=255)

                                                           aCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCa                                >  2:52552/1‑91 (MQ=255)

                                                            cGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAt                               >  2:2761529/1‑91 (MQ=255)

                                                              tAAAGCATCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttca                             <  1:457055‑M2/91‑64 (MQ=255)

                                                              tAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttt                             >  2:2811314/1‑91 (MQ=255)

                                                               aaaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAtttt                            >  2:1680716/1‑91 (MQ=255)

                                                               aaaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAtttt                            >  1:2009581/1‑91 (MQ=255)

                                                                 aGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTg                          <  1:2636377/91‑1 (MQ=255)

                                                                  gCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGa                         <  2:1808651/91‑1 (MQ=255)

                                                                  gCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGa                         >  1:1309142/1‑91 (MQ=255)

                                                                   cATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGAc                        >  2:2053300/1‑91 (MQ=255)

                                                                    aTCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaatattcaccgtattcatcagttatatactgttttgcttcaactttg                       <  1:3103239‑M2/91‑70 (MQ=255)

                                                                    aTCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttg                       <  1:1794538‑M2/91‑70 (MQ=255)

                                                                    aTCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACg                       <  2:1634486/91‑1 (MQ=255)

                                                                     tCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttgg                      <  1:2554839‑M2/91‑71 (MQ=255)

                                                                      cAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc                     <  2:3133330‑M2/91‑72 (MQ=255)

                                                                      cAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc                     <  1:1303763‑M2/91‑72 (MQ=255)

                                                                      cAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGaa                     >  1:1019938/1‑91 (MQ=255)

                                                                        gggAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGaaa                    >  2:1605791/1‑90 (MQ=255)

                                                                        gggAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGaaa                    <  1:1605791/90‑1 (MQ=255)

                                                                         ggAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGa                  >  1:2324186/1‑91 (MQ=255)

                                                                           aaaCAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGAcc                <  1:928542/91‑1 (MQ=255)

                                                                            aaCAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGaaa                    >  1:3574094/1‑86 (MQ=255)

                                                                            aaCAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCa               >  1:3427650/1‑91 (MQ=255)

                                                                             aCAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCaa              >  2:1889837/1‑91 (MQ=255)

                                                                             aCAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCaa              >  1:2107938/1‑91 (MQ=255)

                                                                              cAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAAt             <  1:1199357/91‑1 (MQ=255)

                                                                               aaGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCGAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATa            <  2:201212/91‑1 (MQ=255)

                                                                                aGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCTATAc           >  1:3230324/1‑91 (MQ=255)

                                                                                aGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATAc           <  2:15098/91‑1 (MQ=255)

                                                                                aGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATAc           <  1:690590/91‑1 (MQ=255)

                                                                                aGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATAc           >  2:3260051/1‑91 (MQ=255)

                                                                                 ggTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATAcc          >  1:2140130/1‑91 (MQ=255)

                                                                                  gTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTTACTAAAGACTAATACCg         >  2:3516135/1‑91 (MQ=255)

                                                                                  gTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCg         <  2:1387907/91‑1 (MQ=255)

                                                                                  gTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCg         <  2:2459762/91‑1 (MQ=255)

                                                                                   tGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGa        >  2:3269706/1‑91 (MQ=255)

                                                                                    gACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGAt       >  2:3781061/1‑91 (MQ=255)

                                                                                    gACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGAt       >  2:3043171/1‑91 (MQ=255)

                                                                                    gACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGAt       <  1:3374671/91‑1 (MQ=255)

                                                                                     aCCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGAtt      >  1:1422742/1‑91 (MQ=255)

                                                                                         aGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGATTATAc  >  2:1019824/1‑91 (MQ=255)

                                                                                         aGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGATTATAc  >  1:2209903/1‑91 (MQ=255)

GCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAAAGACCAATACCGATTATAC  >  USA300TCH1516_ALE/1267644‑1267823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.