| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1267714 | 156 (0.820) | 13 (0.070) | 9/150 | NT | 7.6% | coding (1004/2076 nt) | topA | DNA topoisomerase 1 |
| ? | USA300TCH1516_ALE | = 1267733 | 170 (0.950) | coding (1023/2076 nt) | topA | DNA topoisomerase 1 | |||||
Only 100 of 233 total aligned reads displayed.
CTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAA > USA300TCH1516_ALE/1267624‑1267804 | cacGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAgg > 2:2816983/1‑91 (MQ=255) cGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGa < 1:1349984/91‑1 (MQ=255) gTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGaa > 2:134331/1‑91 (MQ=255) tttCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACa < 2:137224/91‑1 (MQ=255) ttCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACaa > 2:205000/1‑91 (MQ=255) tCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAg < 1:1576573/91‑1 (MQ=255) tCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAg > 2:727683/1‑91 (MQ=255) cAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAgg < 1:983474/91‑1 (MQ=255) aGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGt > 1:1434645/1‑91 (MQ=255) aGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGt > 1:1014142/1‑91 (MQ=255) gATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCttggtcaccttgtt < 1:2933094‑M1/91‑15 (MQ=255) cTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCa > 1:2876492/1‑91 (MQ=255) gCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCttggtcaccttgtttccctg < 1:1303763‑M1/91‑21 (MQ=255) gCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCttggtcaccttgtttccctg < 2:3133330‑M1/91‑21 (MQ=255) cAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgat < 1:436755‑M2/91‑4 (MQ=255) aaaGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgatg > 2:3397046‑M2/1‑87 (MQ=255) aaaGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgatg < 2:161273‑M2/91‑5 (MQ=255) aaGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCttggtcaccttgtttccctgatgc < 1:1305861‑M1/91‑25 (MQ=255) gTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTGCACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGccc < 1:3880224/91‑1 (MQ=255) gTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGccc > 1:3463003/1‑91 (MQ=255) gTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGccc > 2:1900135/1‑91 (MQ=255) ttGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa < 2:3176099/91‑1 (MQ=255) ttGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa < 2:3852585/91‑1 (MQ=255) tGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACAGTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCAt < 1:3074811/91‑1 (MQ=255) tGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCttggtcaccttgtttccctgatgcttta < 1:457055‑M1/91‑29 (MQ=255) tGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCAt < 2:146444/91‑1 (MQ=255) gAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATg > 1:872897/1‑91 (MQ=255) aaGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGTAACAAGGTGACCAAGATGCCCATGa > 1:322475/1‑91 (MQ=255) aaGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGa > 1:851771/1‑91 (MQ=255) aGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAg < 1:1873950/91‑1 (MQ=255) gCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAgg > 2:2810230/1‑91 (MQ=255) aaaaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCt < 2:158823/91‑1 (MQ=255) aaaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTa > 1:2451472/1‑91 (MQ=255) aaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTAt < 2:2153588/91‑1 (MQ=255) aaCAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTAt > 2:3330245/1‑91 (MQ=255) cAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTa < 1:1909465/91‑1 (MQ=255) aGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAg > 1:1322528/1‑91 (MQ=255) aGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAg < 2:739069/91‑1 (MQ=255) gTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGa > 2:1447180/1‑91 (MQ=255) gTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGa > 2:840928/1‑91 (MQ=255) tatataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAc < 1:3557619/91‑1 (MQ=255) tatataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAc > 1:856711/1‑91 (MQ=255) atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa < 2:47136/76‑1 (MQ=255) atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCa > 1:2578941/1‑76 (MQ=255) atataACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGAcc > 2:2573627/1‑91 (MQ=255) taACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTc < 2:3673856/91‑1 (MQ=255) aCTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCaa > 1:651405/1‑91 (MQ=255) cTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAg < 1:2651521/91‑1 (MQ=255) tGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGt > 2:3264501/1‑91 (MQ=255) gATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTa > 2:2615662/1‑91 (MQ=255) tAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACt < 1:3395552/91‑1 (MQ=255) aaaTACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTa > 1:2742159/1‑91 (MQ=255) aTACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATg > 2:2133428/1‑91 (MQ=255) aCGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCg > 1:639744/1‑91 (MQ=255) aCGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCg < 2:3529401/91‑1 (MQ=255) gAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGc > 2:3734481/1‑91 (MQ=255) gAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGc > 2:1037564/1‑91 (MQ=255) aaTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGcc > 2:3554521/1‑91 (MQ=255) aaTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGcc > 2:2913616/1‑91 (MQ=255) aTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCa > 1:1816661/1‑91 (MQ=255) aTCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCa > 2:1421120/1‑91 (MQ=255) cTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAga < 1:1267306/91‑1 (MQ=255) cTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAga < 1:2816885/91‑1 (MQ=255) ttACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgat > 1:1225143/1‑91 (MQ=255) acacTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAgatga < 2:1200934/91‑1 (MQ=255) cTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGatat > 2:3006273/1‑91 (MQ=255) ttCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgt < 2:3428835‑M2/91‑55 (MQ=255) tCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGa < 1:1037564/91‑1 (MQ=255) tCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGa < 1:3734481/91‑1 (MQ=255) aaCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTc < 1:2552636/91‑1 (MQ=255) aaCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTc < 2:3786307/91‑1 (MQ=255) aCGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCa > 2:52552/1‑91 (MQ=255) tAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttt < 1:179083/91‑1 (MQ=255) tAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttt > 2:2811608/1‑91 (MQ=255) tAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttt < 2:2059722/91‑1 (MQ=255) tAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttt > 1:2490032/1‑91 (MQ=255) aaaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAtttt > 2:1680716/1‑91 (MQ=255) aaaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAtttt > 1:2009581/1‑91 (MQ=255) aaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttttt > 1:22421/1‑91 (MQ=255) aaGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCAttttt < 2:1096039/91‑1 (MQ=255) aGCATCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaact < 2:213561‑M2/91‑67 (MQ=255) aGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTg < 1:1163115/91‑1 (MQ=255) aGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTg < 1:2636376/91‑1 (MQ=255) gCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGa > 1:203173/1‑91 (MQ=255) gCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGa < 2:1808651/91‑1 (MQ=255) cATCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaacttt > 1:2633‑M1/1‑4 (MQ=255) cATCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaacttt < 1:2009409‑M1/91‑88 (MQ=255) cATCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaacttt > 2:2520609‑M1/1‑4 (MQ=255) cATCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaacttt < 1:1806286‑M1/91‑88 (MQ=255) aTCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcatttatatactgttttgcttcaactttg < 2:2028680‑M1/91‑89 (MQ=255) aTCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcatttatatactgttttgcttcaactttg < 2:2026631‑M1/91‑89 (MQ=255) aTCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcatttatatactgttttgcttcaactttg < 2:2025850‑M1/91‑89 (MQ=255) aTCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaatattcaccgtattcatcagttatatactgttttgcttcaactttg < 1:3103239‑M2/91‑70 (MQ=255) tCttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttgg < 2:1297819‑M1/91‑90 (MQ=255) tCAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttgg < 1:2554839‑M2/91‑71 (MQ=255) cttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc > 1:1533929‑M1/1‑1 (MQ=255) cttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc < 1:49840‑M1/91‑91 (MQ=255) cttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc > 2:56446‑M1/1‑1 (MQ=255) cttggtcaccttgtttccctgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc > 2:2066011‑M1/1‑1 (MQ=255) cAGGGAAACAAGGTGACCAAgatgctttacgtttagaagtgtaagattcaccgtatttatcagttatatactgttttgcttcaactttggc < 2:3133341‑M2/91‑72 (MQ=255) | CTACACGTATTTCAGATACTGCCAAAGTTGAAGCAAAACAGTATATAACTGATAAATACGGTGAATCTTACACTTCTAAACGTAAAGCATCAGGGAAACAAGGTGACCAAGATGCCCATGAGGCTATTAGACCTTCAAGTACTATGCGTACGCCAGATGATATGAAGTCATTTTTGACGAA > USA300TCH1516_ALE/1267624‑1267804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |