| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1278212 = | 183 (0.960) | 23 (0.140) | 11/140 | NT | 13.9% | intergenic (+237/‑136) | frr/uppS | Ribosome‑recycling factor/Isoprenyl transferase |
| ? | USA300TCH1516_ALE | 1278244 = | 124 (0.750) | intergenic (+269/‑104) | frr/uppS | Ribosome‑recycling factor/Isoprenyl transferase | |||||
GTATAAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1278311‑1278212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacagtttTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAGGC > USA300TCH1516_ALE/1278244‑1278333 GTATAAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCG > 1:1221527/1‑91GTATAAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCG > 1:1064607/1‑91GTATAAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCG > 1:1969528/1‑91 AAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTAC > 1:1192368/1‑91 AAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTAC > 2:416471/1‑91 AAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTAC > 1:475924/1‑91 AAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTAC < 2:3047043/91‑1 GTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAG > 2:1854254/1‑91 GTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAG > 1:880760/1‑91 GTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAG > 2:1236067/1‑91 GTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAG > 2:1854114/1‑91 GTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAG > 2:1856035/1‑91 TTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAGT < 1:3526780/91‑1 TAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACC‑GAGTCAGACTTTGGTACAGTTTTT < 1:2956046/91‑1 AAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACC‑GAGTCAGACTTTGGTACAGTTTTTT < 1:67257/91‑1 AAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACC‑GAGTCAGACTTTGGTACAGTTTTTT < 1:67197/91‑1 TATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACC‑GAGTCAGACATTGGTACAGTTTTTTTACTTGCTTA > 1:295737/1‑91 TATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCG > 2:1249809/1‑61 TATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCG < 1:1249809/61‑1 AAAACTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTGTTTGCTTATTCAAAGCATTAAATGAGTGTGATAAAATGATAATGATTATTTAG > 1:3609634/1‑91 AACTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTA > 1:2267025/1‑91 AACTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTA > 2:3004331/1‑91 CTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAAC > 1:851451/1‑91 CTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAAC > 2:372429/1‑91 CTGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAAC > 1:2281278/1‑91 TGTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACT > 2:482179/1‑91 GTACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTT > 2:590239/1‑91 cACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTGAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 2:2942022/2‑91 TACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 2:2941894/1‑91 TACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 1:3398884/1‑91 TACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 1:3686698/1‑91 TACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 1:1407111/1‑91 TACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTA > 1:1407072/1‑91 ACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTAT > 2:1224725/1‑91 ACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTAT > 2:3427188/1‑91 ACCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTAT > 1:1966615/1‑91 CCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATA > 2:142806/1‑91 CCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATA > 1:1421783/1‑91 CCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATA > 1:1260841/1‑91 CCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATA > 2:839164/1‑91 CCAAAGTCTGAC‑TCGGTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATA > 2:839165/1‑91 GTACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGAT < 2:1622439/91‑1 TACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATG > 1:2237026/1‑91 TACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATG > 1:2381938/1‑91 ACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGA < 2:2345379/91‑1 ACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGA > 2:2358554/1‑91 ACAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGA < 2:2708575/91‑1 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAGAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT < 1:3080172/91‑1 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT < 2:2257221/91‑1 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT > 2:1945984/1‑91 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT < 1:1515262/91‑1 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT > 1:820515/1‑91 CAGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGAAAGAGATGAT > 1:3727461/1‑91 CAGTTTTTTTATGTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGAT > 1:2989061/1‑91 AGTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATC < 2:1407061/91‑1 GTTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCA < 2:2496715/91‑1 TTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAG < 1:2264066/91‑1 TTTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAG < 2:559093/91‑1 TTTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAGG < 1:259345/91‑1 TTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAGGC < 2:2854714/91‑1 GTATAAGTTACTAAACAATCATTATCATTTTATCATACTCATTTAATGCATTGAATAAGCAAATAAAAAAACTGTACCAAAGTCTGAC‑TCGGTACAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1278311‑1278212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtacagtttTTTTATTTGCTTATTCAATGCATTAAATGAGTATGATAAAATGATAATGATTGTTTAGTAACTTATACTATATGACAGAGATGATCAGGC > USA300TCH1516_ALE/1278244‑1278333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |