| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1279936 = | 200 (1.050) | 20 (0.150) +TTTGAAAATTATACGCAATATTAAC |
9/110 | NT | 13.4% | intergenic (+29/‑233) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease |
| ? | USA300TCH1516_ALE | 1279975 = | 177 (0.930) | intergenic (+68/‑194) | cdsA/USA300HOU_RS06360 | Phosphatidate cytidylyltransferase/Putative zinc metalloprotease | |||||
TCAAAAGGAGTTCTGAGATTCATTAAATTATCTCAGCAACTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1279979‑1279936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATA > USA300TCH1516_ALE/1279975‑1280044 ||||||||||||||||||||||||| TCAAAAGGAGTTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATT > 2:2625833/1‑91TCAAAAGGAGTTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATT > 2:2625810/1‑91 GGAGTTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTT > 2:814677/1‑91 AGTTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGA > 1:1614800/1‑91 TTCTGAGATTCCTTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAA > 1:3500498/1‑91 TTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAA > 1:3782794/1‑91 TTCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATAGTAACTTTGAAAATTATACGCAATATTAACTTTGAAA > 2:3836955/1‑91 TCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAACTTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAA > 2:3189327/1‑91 TCTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAA > 1:2698517/1‑91 CTGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 2:759785/1‑91 TGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:3059570/1‑91 TGAGATTCATTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAGTATACGCAATATTAACTATGAAAATT > 2:3365362/1‑91 TTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAAT > 2:2101984/1‑91 TTAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTAGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAAT > 2:3417542/1‑91 TAAATTATCTCAGCAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATA < 2:2698517/91‑1 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT < 1:978625/91‑1 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 2:198936/1‑91 AACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAAT > 2:768574/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATT > 2:238319/1‑91 ACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACACAATATTAACTTTGAAAATT > 1:1564299/1‑91 CTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTATGAAAATTA > 1:3713342/1‑91 AAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATA < 2:3312249/91‑1 ||||||||||||||||||||||||| TCAAAAGGAGTTCTGAGATTCATTAAATTATCTCAGCAACTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1279979‑1279936‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATA > USA300TCH1516_ALE/1279975‑1280044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |