New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1279936 =200 (1.050)20 (0.150)
+TTTGAAAATTATACGCAATATTAAC
9/110 NT 13.4% intergenic (+29/‑233) cdsA/USA300HOU_RS06360 Phosphatidate cytidylyltransferase/Putative zinc metalloprotease
?USA300TCH1516_ALE 1279975 = 177 (0.930)intergenic (+68/‑194) cdsA/USA300HOU_RS06360 Phosphatidate cytidylyltransferase/Putative zinc metalloprotease

Only 100 of 253 total aligned reads displayed.

ACCGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTT  >  USA300TCH1516_ALE/1279846‑1280026
                                                                                          |                                                                                          
aCCGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAaga                                                                                            <  1:2442640/91‑1 (MQ=255)
 ccGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAagag                                                                                           >  1:2484846/1‑91 (MQ=255)
  cGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAgagg                                                                                          <  2:91628/91‑1 (MQ=255)
    aTTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATGTTATTAATACAATCTTAATGCTGAAAACAAACCAATAAACGTAAAgaggag                                                                                        <  2:856339/91‑1 (MQ=255)
     tttGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGt                                                                                       >  1:3773478/1‑91 (MQ=255)
     tttGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGt                                                                                       <  2:1806679/91‑1 (MQ=255)
     aattttcaaagttaatattgtgtataattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGt                                                                                       >  1:1564299‑M1/86‑91 (MQ=255)
     aattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGt                                                                                       >  2:238319‑M1/86‑91 (MQ=255)
      ttGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGtt                                                                                      >  2:2023352/1‑91 (MQ=255)
      attttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGtt                                                                                      <  1:978625‑M1/7‑1 (MQ=255)
        gACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGc                                                                                    >  1:2853621/1‑91 (MQ=255)
         aCAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCt                                                                                   >  1:818013/1‑91 (MQ=255)
         aCAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCt                                                                                   >  1:861371/1‑91 (MQ=255)
         aCAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCt                                                                                   <  1:2122331/91‑1 (MQ=255)
          cAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTg                                                                                  >  2:1583670/1‑91 (MQ=255)
           aGCTTTATGTTTGTGTTACCATTCTTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTga                                                                                 >  1:3755578/1‑91 (MQ=255)
             cTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTgaga                                                                               >  1:1328027/1‑91 (MQ=255)
             cTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTgaga                                                                               >  1:1327833/1‑91 (MQ=255)
               ttATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATa                                                                             >  1:1425778/1‑91 (MQ=255)
               ttATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATa                                                                             >  1:2537010/1‑91 (MQ=255)
                 aTGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAAt                                                                           >  2:378385/1‑91 (MQ=255)
                 aTGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAAt                                                                           <  1:3528462/91‑1 (MQ=255)
                 aTGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAAt                                                                           <  1:3528431/91‑1 (MQ=255)
                 aTGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAAt                                                                           >  1:1094379/1‑91 (MQ=255)
                  tGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAAtt                                                                          >  2:1695663/1‑91 (MQ=255)
                    tttGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTa                                                                        >  2:330917/1‑91 (MQ=255)
                     ttGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTaa                                                                       <  1:907906/91‑1 (MQ=255)
                     attgcgtataattttcaaagttaatattgcgtataattttctaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTaa                                                                       >  2:3417542‑M1/70‑91 (MQ=255)
                     attgcgtataattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTaa                                                                       >  2:2101984‑M1/70‑91 (MQ=255)
                      tgtgTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAAt                                                                      <  1:1013645/91‑1 (MQ=255)
                        tgtTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCTATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGa                                                                    <  1:3270547/91‑1 (MQ=255)
                             ccATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAAtctc                                                               >  2:1054177/1‑91 (MQ=255)
                             ccATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAAtctc                                                               >  1:1088631/1‑91 (MQ=255)
                             ccATTATTAAATATTTTATTAATACAATCTTAATGCCGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAAtctc                                                               >  1:2504049/1‑91 (MQ=255)
                              aattttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTAATGAATCTCa                                                              >  2:3059570‑M1/61‑91 (MQ=255)
                               attttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                             >  2:759785‑M1/60‑91 (MQ=255)
                               attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                             <  2:39356/91‑1 (MQ=255)
                               attattAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                             <  1:1227972/91‑1 (MQ=255)
                               attattAAATATTTTATTAATACAATCTTAACGCTGAGAACAAAGCAATAAACGTAAGGAGGAGTTGCTGAGATAATTTAATGAATCTCAg                                                             <  1:3092759/91‑1 (MQ=255)
                                ttttcaaagttaatattgcgtataattttcaaagttaatattgcgtataattttcaaaAGGAGTTGCTGAGATAATTTAATGAATCTCAGa                                                            >  1:2698517‑M1/59‑91 (MQ=255)
                                ttttcaaagttaatattgcgtataattttcaaagttaatattgcgtataagtttcaaaAGGAGTTGCTGAGATAATTTAATGAATCTCAGa                                                            >  2:3189327‑M1/59‑91 (MQ=255)
                                ttattaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGa                                                            <  1:444609/91‑1 (MQ=255)
                                ttattaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGa                                                            >  1:2437802/1‑91 (MQ=255)
                                 tattaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaa                                                           >  1:3850496/1‑91 (MQ=255)
                                 tattaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaa                                                           >  1:1626345/1‑91 (MQ=255)
                                 tattaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGaa                                                           >  1:218748/1‑91 (MQ=255)
                                  attaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAAc                                                          >  1:2804574/1‑91 (MQ=255)
                                   ttaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACt                                                         >  2:2000045/1‑91 (MQ=255)
                                   ttaAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACt                                                         >  1:203362/1‑91 (MQ=255)
                                    taAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTc                                                        >  2:557734/1‑91 (MQ=255)
                                    taAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTc                                                        <  1:155248/91‑1 (MQ=255)
                                     aaaTATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTcc                                                       >  1:724418/1‑91 (MQ=255)
                                     aaaTATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTcc                                                       <  2:763167/91‑1 (MQ=255)
                                      aaTATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGCAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCt                                                      >  2:3833512/1‑91 (MQ=255)
                                       atatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                     >  2:1731693/1‑91 (MQ=255)
                                        tatTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCttt                                                    <  2:3018115/91‑1 (MQ=255)
                                         atTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtttt                                                   >  2:323983/1‑91 (MQ=255)
                                          ttttATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTg                                                  <  2:3787454/91‑1 (MQ=255)
                                           tttATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGa                                                 <  2:288962/91‑1 (MQ=255)
                                            ttattaATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGaa                                                >  1:505403/1‑91 (MQ=255)
                                                  aTACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATtat                                          >  1:2242296/1‑91 (MQ=255)
                                                    aCAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATAc                                        >  1:1189190/1‑91 (MQ=255)
                                                      aaTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGc                                      <  1:1907696/91‑1 (MQ=255)
                                                      aaTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATAAATCTCATAACTCCTTTTGAAAATTATACGc                                      <  2:2541229/91‑1 (MQ=255)
                                                       aTCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCa                                     >  2:348594/1‑91 (MQ=255)
                                                        tCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCaa                                    <  2:1939788/91‑1 (MQ=255)
                                                          ttAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAata                                  >  1:392380/1‑91 (MQ=255)
                                                           tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                 <  2:159795/91‑1 (MQ=255)
                                                           tAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTCGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAatat                                 >  1:3261076/1‑91 (MQ=255)
                                                            aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATCtt                                >  1:1794429/1‑91 (MQ=255)
                                                            aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATAtt                                <  2:2078193/91‑1 (MQ=255)
                                                            aaTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATAtt                                >  2:2612284/1‑91 (MQ=255)
                                                             aTGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTa                               >  1:1074981/1‑91 (MQ=255)
                                                               gCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAACTATACGCAATATTAAc                             >  2:3705764/1‑91 (MQ=255)
                                                                 tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                           >  1:3366029/1‑91 (MQ=255)
                                                                 tGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACtt                           <  2:1088632/91‑1 (MQ=255)
                                                                  gagaACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACttt                          <  1:1363146/91‑1 (MQ=255)
                                                                      aCAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGaaa                      <  2:3692060/91‑1 (MQ=255)
                                                                        aaaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAt                    <  2:2753551/91‑1 (MQ=255)
                                                                        aaaTCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAAt                    <  1:1880979/91‑1 (MQ=255)
                                                                           tCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtat                 >  2:87766/1‑91 (MQ=255)
                                                                           tCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtat                 >  2:86342/1‑91 (MQ=255)
                                                                            cAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATtata                >  1:1688938/1‑91 (MQ=255)
                                                                               tAAACGTCAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGc             <  2:3444000/91‑1 (MQ=255)
                                                                                aaaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCtt                                                     >  2:815970/1‑50 (MQ=255)
                                                                                aaaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCa            >  2:1423918/1‑91 (MQ=255)
                                                                                aaaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCa            >  1:2431969/1‑91 (MQ=255)
                                                                                aaaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCa            <  1:704484/91‑1 (MQ=255)
                                                                                 aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa           <  2:2112792/91‑1 (MQ=255)
                                                                                 aaCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCaa           >  1:2356254/1‑91 (MQ=255)
                                                                                  aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat          <  2:1407784/91‑1 (MQ=255)
                                                                                  aCGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAat          <  2:1189190/91‑1 (MQ=255)
                                                                                   cGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATGAACTTTGAAAATTATACGCAata         <  2:2105763/91‑1 (MQ=255)
                                                                                    gTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAatat        <  2:1860482/91‑1 (MQ=255)
                                                                                     tAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATAtt       <  2:2244958/91‑1 (MQ=255)
                                                                                      aaaGAGGAGTTGCTGCGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa      >  2:494062/1‑91 (MQ=255)
                                                                                      aaaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTa      >  2:2639347/1‑91 (MQ=255)
                                                                                       aaGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTaa     <  2:3084075/91‑1 (MQ=255)
                                                                                         gaggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACt   >  2:3349776/1‑91 (MQ=255)
                                                                                          aggagTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACtt  >  1:3077011/1‑91 (MQ=255)
                                                                                          |                                                                                          
ACCGATTTGACAGCTTTATGTTTGTGTTACCATTATTAAATATTTTATTAATACAATCTTAATGCTGAGAACAAATCAATAAACGTAAAGAGGAGTTGCTGAGATAATTTAATGAATCTCAGAACTCCTTTTGAAAATTATACGCAATATTAACTTTGAAAATTATACGCAATATTAACTT  >  USA300TCH1516_ALE/1279846‑1280026

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.