New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1292499	124 (0.650)	13 (0.090)	6/128	NT	11.2%	intergenic (+53/‑333)	infB/rbfA	Translation initiation factor IF‑2/Ribosome‑binding factor A
	?	USA300TCH1516_ALE	= 1292522	108 (0.710)					intergenic (+76/‑310)	infB/rbfA	Translation initiation factor IF‑2/Ribosome‑binding factor A

TTAAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1292394‑1292499 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatgctccctataaaGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  USA300TCH1516_ALE/1292522‑1292433                                                                                                                                                                                                      TTAAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGA                                                                                                           <  2:343163/91‑1  TAAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGAT                                                                                                          <  2:421078/91‑1   AAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATA                                                                                                         <  2:3644369/91‑1   AAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATA                                                                                                         >  2:849265/1‑91    AAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATAT                                                                                                        <  2:903984/91‑1     AGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATG                                                                                                       >  2:1165836/1‑91     AGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATG                                                                                                       >  1:2438946/1‑91     AGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATG                                                                                                       >  1:2438752/1‑91     AGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATG                                                                                                       >  1:2438375/1‑91       AAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCT                                                                                                     <  1:1728893/91‑1       AAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCT                                                                                                     <  1:1729201/91‑1       AAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTGAAGATTGATATGCg                                                                                                     <  2:422974/91‑2        AGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTC                                                                                                    <  2:2724170/91‑1         GGCGATGTTATTGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  2:18862/1‑91         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  1:2804237/1‑91         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  1:579561/1‑91         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   <  1:1313070/91‑1         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   <  2:1981716/91‑1         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   <  2:1981773/91‑1         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  1:3832099/1‑91         GGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  1:1346187/1‑91         GGCGATGTTATCGAAACATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACCAGCTAAAAGTATAGTTAAGATTGATATGCTCC                                                                                                   >  1:3305261/1‑91          GCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCC                                                                                                  >  2:2004620/1‑91          GCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCC                                                                                                  >  1:664795/1‑91          GCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCC                                                                                                  >  1:664442/1‑91           CGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCT                                                                                                 <  2:3666034/91‑1           CGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCT                                                                                                 >  2:1316896/1‑91           CGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCT                                                                                                 >  1:2061171/1‑91           CGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCT                                                                                                 <  1:165251/91‑1            GATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTA                                                                                                >  2:203996/1‑91            GATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTA                                                                                                <  1:1722401/91‑1            GATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATGAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTA                                                                                                <  1:3875132/91‑1             ATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTAT                                                                                               >  1:187173/1‑91              TGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATA                                                                                              >  1:3399023/1‑91              TGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATA                                                                                              >  1:3400863/1‑91              TGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATA                                                                                              >  1:3399396/1‑91              TGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATA                                                                                              >  1:3398996/1‑91               GTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAA                                                                                             >  2:2503216/1‑91               GTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAA                                                                                             >  2:2735656/1‑91               GTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAA                                                                                             >  2:2805300/1‑91               GTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATCGATATGCTCCCTATAA                                                                                             >  2:2980367/1‑91                TTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAA                                                                                            >  1:1957325/1‑91                TTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAA                                                                                            >  2:3865109/1‑91                  ATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAtata                                                                                          >  1:3499062/1‑87                               AAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAA                                                                             <  2:720975/91‑1                               AAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAA                                                                             <  2:1635356/91‑1                               AAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAA                                                                             <  2:721498/91‑1                                         AATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATT                                                                   <  2:3782285/91‑1                                         AATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATT                                                                   <  2:112590/91‑1                                         AATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATT                                                                   <  2:2057926/91‑1                                          ATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTT                                                                  <  1:258917/91‑1                                          ATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTT                                                                  <  2:2817112/91‑1                                             AAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATA                                                               <  1:1897433/91‑1                                             AAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATA                                                               <  1:1897445/91‑1                                                  TTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAG                                                          <  1:3252719/91‑1                                                   TAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGC                                                         <  1:1436570/91‑1                                                   TAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATACTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGC                                                         <  2:3484139/91‑1                                                                                           ATATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTA                 <  2:2329617/91‑1                                                                                            TATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAA                <  1:3840521/91‑1                                                                                            TATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAA                >  1:2857093/1‑91                                                                                            TATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAA                <  2:1416508/91‑1                                                                                             ATGCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAAT               >  2:3590668/1‑91                                                                                               GCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTA             <  2:179888/91‑1                                                                                               GCTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTA             <  1:1301615/91‑1                                                                                                CTCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAA            <  2:2840151/91‑1                                                                                                 TCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAAC           <  2:954632/91‑1                                                                                                 TCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAAC           <  2:1309943/91‑1                                                                                                 TCCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAAC           >  1:2805300/1‑91                                                                                                  CCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACG          <  1:1759650/91‑1                                                                                                  CCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACG          <  1:1759663/91‑1                                                                                                  CCCTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACG          >  2:3240627/1‑91                                                                                                    CTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCT        >  1:3146706/1‑91                                                                                                    CTATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCT        >  1:3828417/1‑91                                                                                                     TATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTT       <  1:188159/91‑1                                                                                                     TATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTT       <  1:234880/91‑1                                                                                                      ATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTA      >  1:3579379/1‑91                                                                                                      ATAAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTA      <  1:2163873/91‑1                                                                                                        AAAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAAT    >  1:664168/1‑91                                                                                                         AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATT   >  1:444891/1‑91                                                                                                         AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATT   >  1:3165289/1‑91                                                                                                         AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATT   >  2:2840523/1‑91                                                                                                         AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATT   <  2:1592865/91‑1                                                                                                         AAGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATT   >  2:2643677/1‑91                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAGCGCTTAATTT  >  1:2636217/1‑91                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  2:2605900/91‑1                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  1:352811/91‑1                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  >  1:2636270/1‑91                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  2:2397569/91‑1                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  1:2073120/91‑1                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  2:2397697/91‑1                                                                                                          AGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  >  2:2611041/1‑91                                                                                                                                                                                                      TTAAAGAAGGCGATGTTATCGAAGCATTTGAAATGGTTGAAATTAAGCGTTAATTAAATAAATTACAAGCTAAAAGTATAGTTAAGATTGATATGCTCCCTATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1292394‑1292499 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atatgctccctataaaGTAGACACTTAAAAAGTGCAATATTTATAGGGAGCATATCAATCTTAACTATACTTTTAGCTTGTAATTTATTTAATTAACGCTTAATTT  <  USA300TCH1516_ALE/1292522‑1292433

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.