BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1332949	156 (0.820)	21 (0.140)	12/124	NT	13.4%	intergenic (+159/+63)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA
*	?	USA300TCH1516_ALE	= 1332971	152 (1.030)	21 (0.140)	12/124	NT	13.4%	intergenic (+181/+41)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 115 total aligned reads displayed.

TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1332842‑1332949

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaagTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT  <  USA300TCH1516_ALE/1332971‑1332882

TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA                                                                                                             <  1:3159768/91‑1

TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA                                                                                                             >  1:1108392/1‑91

TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA                                                                                                             <  1:3156783/91‑1

 ATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAA                                                                                                            <  2:842709/91‑1

 ATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAA                                                                                                            >  1:3048305/1‑91

 ATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAA                                                                                                            >  1:3048087/1‑91

 ATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAA                                                                                                            >  1:686213/1‑91

   GATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAA                                                                                                          <  1:3345062/91‑1

   GATAAATAGATATAGAAATAAAGTCATATGTGACATCAAGTAAATGATGTTCAAATGGCAAGATACAATAGAGGAATGTTTGTAATAAAAA                                                                                                          <  1:219586/91‑1

    ATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAAC                                                                                                         <  1:1862813/91‑1

     TAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACG                                                                                                        <  2:1254485/91‑1

      AAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGC                                                                                                       >  1:3807532/1‑91

      AAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGC                                                                                                       <  2:1458646/91‑1

      AAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGC                                                                                                       >  1:2485808/1‑91

      AAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGC                                                                                                       >  1:2485853/1‑91

        ATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTT                                                                                                     <  1:1897949/91‑1

        ATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTT                                                                                                     >  1:2162829/1‑91

         TAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA                                                                                                             <  1:947709/82‑1

         TAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAA                                                                                                             >  2:947709/1‑82

          AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA                                                                                                   <  2:680412/91‑1

          AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA                                                                                                   <  2:412597/91‑1

          AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA                                                                                                   >  1:1376684/1‑91

          AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA                                                                                                   <  2:1341057/91‑1

          AGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCA                                                                                                   <  1:3482964/91‑1

           GATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCAT                                                                                                  >  2:701198/1‑91

           GATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCAT                                                                                                  >  2:2001046/1‑91

           GATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCAT                                                                                                  >  2:2000867/1‑91

           GATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCAT                                                                                                  <  1:3379812/91‑1

            ATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATA                                                                                                 <  2:1792891/91‑1

            ATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATA                                                                                                 >  2:347985/1‑91

            ATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATA                                                                                                 >  1:154353/1‑91

            ATATAGAAATAAAGGCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGCATGTTTGTAATAAAAACGCTTCATA                                                                                                 >  2:348207/1‑91

             TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT                                                                                                <  2:1288739/91‑1

             TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT                                                                                                >  2:1801377/1‑91

             TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT                                                                                                <  2:1046796/91‑1

             TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT                                                                                                >  2:1801265/1‑91

             TATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAT                                                                                                >  2:548983/1‑91

              ATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATA                                                                                               <  2:3467101/91‑1

              ATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATA                                                                                               <  1:3725356/91‑1

               TAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAA                                                                                              >  1:2681154/1‑91

               TAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAA                                                                                              <  1:3165498/91‑1

                AGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAA                                                                                             >  1:829666/1‑91

                AGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCATCAAATAAA                                                                                             >  2:943373/1‑91

                 GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG                                                                                            <  2:358394/91‑1

                 GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG                                                                                            >  2:1968357/1‑91

                 GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG                                                                                            >  1:724746/1‑91

                 GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG                                                                                            >  2:1968028/1‑91

                          TCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCAT                                                                                   <  1:870997/91‑1

                                    CATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTC                                                                         <  2:3239028/91‑1

                                         ATTAAATGATTTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT                                                                    <  2:776642/91‑1

                                         ATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT                                                                    <  2:3690403/91‑1

                                         ATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT                                                                    <  1:2887490/91‑1

                                         ATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT                                                                    <  2:776525/91‑1

                                          TTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT                                                                   <  1:523621/91‑1

                                          TTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT                                                                   <  1:523878/91‑1

                                           TAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTT                                                                  <  2:1185479/91‑1

                                               TGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAAAAAGTCGTATCATATATTGACTCGACCTTTATAT                                                              <  2:3448024/91‑1

                                               TGATGTACAAATGACAAGATACAATATGGGAATGTTTGTAATAAAAACGCTTCATAAAAAGTCGTATCATATATTGACTCGACCTTTATAT                                                              <  2:3448088/91‑1

                                                 ATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA                                                            <  2:636728/91‑1

                                                  TGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAA                                                           <  2:175519/91‑1

                                                  TGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAA                                                           <  1:1303281/91‑1

                                                    TTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGC                                                         <  1:393250/91‑1

                                                    TTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGC                                                         <  2:3159718/91‑1

                                                     TCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG                                                        <  2:2884736/91‑1

                                                          TGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTT                                                   <  2:2506095/91‑1

                                                               AGATACAATAGAGGAATGTTTGTAAT‑AAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACA                                             <  2:688189/91‑1

                                                                                          AAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCAT                   >  1:3395708/1‑91

                                                                                           AAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATT                  >  1:1289086/1‑91

                                                                                           AAACACTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATT                  <  1:229284/91‑1

                                                                                             ACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG                <  2:2478995/91‑1

                                                                                             ACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTG                <  2:1027695/91‑1

                                                                                                CTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAAC             >  2:2818041/1‑91

                                                                                                 TTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACA            <  2:3013269/91‑1

                                                                                                 TTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACA            <  2:619856/91‑1

                                                                                                 TTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACA            >  2:111550/1‑91

                                                                                                  TCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACAT           <  2:683757/91‑1

                                                                                                  TCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACAT           <  1:2174409/91‑1

                                                                                                  TCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACAT           <  2:3395708/91‑1

                                                                                                  TCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCAATTGTATCTTGTCATTTGAACAT           <  2:3270367/91‑1

                                                                                                    ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCA         >  1:2006058/1‑91

                                                                                                    ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCA         >  2:477721/1‑91

                                                                                                    ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCA         >  2:474806/1‑91

                                                                                                    ATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCA         >  2:455460/1‑91

                                                                                                     TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCAT        <  2:863348/91‑1

                                                                                                     TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCAT        <  2:2249070/91‑1

                                                                                                     TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCAT        >  2:2241133/1‑91

                                                                                                     TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGGCATTTGAACATCAT        <  2:3297946/91‑1

                                                                                                     TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGGCATTTGAACATCAT        <  2:3297435/91‑1

                                                                                                      ATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATT       >  1:428344/1‑91

                                                                                                        AAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTA     <  2:2660813/91‑1

                                                                                                        AAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTA     <  1:1366688/91‑1

                                                                                                        AAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTA     <  1:1293883/91‑1

                                                                                                          AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT   >  2:420352/1‑91

                                                                                                          AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT   <  1:3214633/91‑1

                                                                                                          AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT   <  1:2755917/91‑1

                                                                                                          AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT   <  1:2755805/91‑1

                                                                                                          AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAAT   <  2:2548513/91‑1

                                                                                                           GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT  <  2:409549/91‑1

                                                                                                           GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT  >  2:1310653/1‑91

                                                                                                           GTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT  >  2:3385033/1‑91

TATGATAAATAGATATAGAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1332842‑1332949

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgcttcatataaagTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTACAAACATTCCTCTATTGTATCTTGTCATTTGAACATCATTTAATT  <  USA300TCH1516_ALE/1332971‑1332882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.