| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1332949 | 156 (0.820) | 21 (0.140) | 12/124 | NT | 13.4% | intergenic (+159/+63) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA |
| ? | USA300TCH1516_ALE | = 1332971 | 152 (1.030) | intergenic (+181/+41) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA | |||||
Only 100 of 306 total aligned reads displayed.
GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCG > USA300TCH1516_ALE/1332859‑1333039 | gAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG > 2:1968357‑M1/1‑91 (MQ=255)gAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAG > 1:724746‑M1/1‑91 (MQ=255) aaaTAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAgg < 2:3739530/91‑1 (MQ=255) tAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCg < 1:1310401/91‑1 (MQ=255) aGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGt > 2:942361/1‑91 (MQ=255) aGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGt > 2:1762540/1‑91 (MQ=255) tCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcat < 1:870997‑M1/91‑10 (MQ=255) cATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCaa > 1:42062/1‑91 (MQ=255) tgtgACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAatata > 1:98218/1‑91 (MQ=255) tgACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATg < 2:2733728/91‑1 (MQ=255) gACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGa > 1:1038191/1‑91 (MQ=255) aCATCATTTAATTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGAt > 2:2488920/1‑91 (MQ=255) cATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactc < 2:3239028‑M1/91‑20 (MQ=255) cATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATa < 1:1587269/91‑1 (MQ=255) aTCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATAc < 1:1934161/91‑1 (MQ=255) cAACTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGa < 1:3013084/91‑1 (MQ=255) aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc < 2:409549‑M2/91‑2 (MQ=255) aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacct < 2:776525‑M1/91‑25 (MQ=255) aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacct < 1:2887490‑M1/91‑25 (MQ=255) ttAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacctt < 1:491829‑M1/91‑26 (MQ=255) tAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtt < 1:1293883‑M2/91‑5 (MQ=255) tAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtt < 1:1366688‑M2/91‑5 (MQ=255) aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttat > 1:428344‑M2/1‑85 (MQ=255) atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata > 2:2241133‑M2/1‑84 (MQ=255) tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat > 1:2006058‑M2/1‑83 (MQ=255) tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat > 2:477721‑M2/1‑83 (MQ=255) tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATAAAAAGtcgtatcatatattgactcgacctttatat < 2:3448024‑M1/91‑31 (MQ=255) atgTTCAAATGACAAGATACAATTGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga < 2:3270367‑M2/91‑11 (MQ=255) atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga < 1:2174409‑M2/91‑11 (MQ=255) tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa < 2:619856‑M2/91‑12 (MQ=255) ttCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagc < 1:393250‑M1/91‑36 (MQ=255) tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcg < 2:2884736‑M1/91‑37 (MQ=255) tCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcg > 2:36264‑M2/1‑77 (MQ=255) cAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgt < 2:2478995‑M2/91‑16 (MQ=255) aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagtgttt < 1:229284‑M2/91‑18 (MQ=255) aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAg > 2:880920/1‑57 (MQ=255) aTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttt > 1:3395708‑M2/1‑73 (MQ=255) tGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTa > 2:3430344/1‑91 (MQ=255) aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCCTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt > 1:3273865/1‑91 (MQ=255) cAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAttt > 1:358684/1‑91 (MQ=255) aaGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTg > 1:3425803/1‑91 (MQ=255) aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc < 1:2610903/91‑1 (MQ=255) aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATAACACTTTATATCAAGCGTTTTATTTGc > 2:3356803/1‑91 (MQ=255) aGATACAATAGAGGAATGTTTGTAAT‑AAAACGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattaca < 2:688189‑M1/91‑48 (MQ=255) aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg < 2:3777363/91‑1 (MQ=255) aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg > 2:292738/1‑91 (MQ=255) aaTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAg > 2:1701587/1‑91 (MQ=255) aTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGc < 1:781336/91‑1 (MQ=255) gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg < 1:803668/91‑1 (MQ=255) gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg < 2:3517708/91‑1 (MQ=255) gAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtat < 1:565238/91‑1 (MQ=255) gAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtat > 2:2672587/1‑91 (MQ=255) aaTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata > 1:911078/1‑91 (MQ=255) aTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTCTATATGAAGCGTTTTATTTGCTATGAGCTAGTatat > 2:3501059/1‑91 (MQ=255) tGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTCTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtt > 2:1340132/1‑91 (MQ=255) gTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAttt > 1:316719/1‑91 (MQ=255) ttGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTta > 2:2085507/1‑91 (MQ=255) ttGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTta < 2:2258284/91‑1 (MQ=255) gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata < 1:2531154/91‑1 (MQ=255) aataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataat < 2:42905/91‑1 (MQ=255) ataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataata > 2:2612791/1‑91 (MQ=255) taaAAACGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattccactattgtatcttgtc < 1:236176‑M1/91‑72 (MQ=255) aaaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtca < 2:2506095‑M2/91‑51 (MQ=255) aaaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATaataat < 2:1829482/91‑1 (MQ=255) aaaCGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatt < 1:3372797‑M1/91‑75 (MQ=255) aaaCGCTTCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatt > 1:1289086‑M1/1‑17 (MQ=255) aaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt < 2:2411135/91‑1 (MQ=255) gCTTCATATAAATtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa > 1:2994634‑M1/1‑13 (MQ=255) gCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa < 2:3159718‑M2/91‑57 (MQ=255) gCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt < 2:1597117/91‑1 (MQ=255) cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa < 1:2728978/91‑1 (MQ=255) cTTCAGATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa < 2:3577373/91‑1 (MQ=255) ttCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaaca < 2:3013269‑M1/91‑81 (MQ=255) ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt < 2:1108392/91‑1 (MQ=255) ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt > 2:565248/1‑91 (MQ=255) ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt > 1:1724912/1‑91 (MQ=255) tCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacat < 2:683757‑M1/91‑82 (MQ=255) tCATATAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacat < 2:3395708‑M1/91‑82 (MQ=255) tCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacat < 2:636728‑M2/91‑60 (MQ=255) cATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt > 2:217197/1‑91 (MQ=255) cATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt < 2:1155512/91‑1 (MQ=255) atatAAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatca > 2:474806‑M1/1‑8 (MQ=255) atatAAAGGTCGAGTCAATATATGATACGActttttatgaagcgtttttattacaaacattcccatattgtatcttgtcatttgtacatca < 2:3448088‑M2/91‑62 (MQ=255) tataAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcat < 2:863348‑M1/91‑85 (MQ=255) tataAAGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttggcatttgaacatcat < 2:3297946‑M1/91‑85 (MQ=255) tataAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtct < 2:739627/91‑1 (MQ=255) tataAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAGTTTTCTATTtct > 2:3224732/1‑91 (MQ=255) aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta < 1:1858340‑M2/91‑66 (MQ=255) aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta < 2:1185479‑M2/91‑66 (MQ=255) aaaGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt < 1:214288/91‑1 (MQ=255) aaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaa < 1:523621‑M2/91‑67 (MQ=255) aaGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt < 2:1293883/91‑1 (MQ=255) aaGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt > 1:1758241/1‑91 (MQ=255) aGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat < 1:2755917‑M1/91‑90 (MQ=255) aGtcgtatcatatattgactcgacctttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat < 1:3214633‑M1/91‑90 (MQ=255) aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat < 2:3690403‑M2/91‑68 (MQ=255) aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaaaatcatttaat < 2:776642‑M2/91‑68 (MQ=255) aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc < 1:3759139/91‑1 (MQ=255) aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTACTTCTCTTTc > 1:3718162/1‑91 (MQ=255) ggTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCg < 2:1038191/91‑1 (MQ=255) | GAAATAAAGTCATATGTGACATCAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCG > USA300TCH1516_ALE/1332859‑1333039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |