BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1332949	156 (0.820)	21 (0.140)	12/124	NT	13.4%	intergenic (+159/+63)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA
*	?	USA300TCH1516_ALE	= 1332971	152 (1.030)	21 (0.140)	12/124	NT	13.4%	intergenic (+181/+41)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 233 total aligned reads displayed.

CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061

cAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGa                                                                                            <  1:2463338/91‑1 (MQ=255)

cAACTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGa                                                                                            <  1:3013084/91‑1 (MQ=255)

 aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc                                                                                           >  2:3385033‑M2/1‑90 (MQ=255)

 aaTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAc                                                                                           >  2:1310653‑M2/1‑90 (MQ=255)

  aTTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGAct                                                                                          <  2:2548513‑M2/91‑3 (MQ=255)

    tAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtt                                                                                        <  2:2660813‑M2/91‑5 (MQ=255)

    tAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActtt                                                                                        <  1:1293883‑M2/91‑5 (MQ=255)

      aaTGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttat                                                                                      >  1:428344‑M2/1‑85 (MQ=255)

       atgatgTTCAAATGCCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  2:3297435‑M2/91‑8 (MQ=255)

       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  2:863348‑M2/91‑8 (MQ=255)

       atgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttata                                                                                     <  2:2249070‑M2/91‑8 (MQ=255)

        tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                    >  2:474806‑M2/1‑83 (MQ=255)

        tgatgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatat                                                                                    >  1:2006058‑M2/1‑83 (MQ=255)

          atgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatga                                                                                  <  2:683757‑M2/91‑11 (MQ=255)

           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 >  2:111550‑M2/1‑80 (MQ=255)

           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 <  2:619856‑M2/91‑12 (MQ=255)

           tgTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaa                                                                                 <  2:3013269‑M2/91‑12 (MQ=255)

                 aaTGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagtgttt                                                                           <  1:229284‑M2/91‑18 (MQ=255)

                   tGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTa                                                                         >  2:3430344/1‑91 (MQ=255)

                   tGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTa                                                                         <  2:2497921/91‑1 (MQ=255)

                   tGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTa                                                                         <  2:3237560/91‑1 (MQ=255)

                    gACAAGATACAATAGTGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttttta                                                                        <  1:236176‑M2/91‑21 (MQ=255)

                     aCAAGATACAATAGAGGAATGTTTGTAATAAAAACGCCTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAtt                                                                       >  1:3273865/1‑91 (MQ=255)

                      cAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAttt                                                                      >  1:358684/1‑91 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                                                    <  1:2610903/91‑1 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                                                    <  1:2949404/91‑1 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGc                                                                    >  1:797934/1‑91 (MQ=255)

                        aGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATAACACTTTATATCAAGCGTTTTATTTGc                                                                    >  2:3356803/1‑91 (MQ=255)

                            aCAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATg                                                                <  2:3777342/91‑1 (MQ=255)

                             cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa                                                               <  1:3342395/91‑1 (MQ=255)

                             cAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGa                                                               <  2:656677/91‑1 (MQ=255)

                              aaTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAg                                                              >  2:1701587/1‑91 (MQ=255)

                                tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                            <  1:863496/91‑1 (MQ=255)

                                  gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                          <  2:3517708/91‑1 (MQ=255)

                                      aaTGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                                      >  1:911078/1‑91 (MQ=255)

                                         gTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAttt                                                   >  1:316719/1‑91 (MQ=255)

                                            tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgttttattacaaacattcctctattgtatct                                                <  2:688189‑M2/91‑45 (MQ=255)

                                             gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                               <  1:2531154/91‑1 (MQ=255)

                                             gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                               <  2:2932264/91‑1 (MQ=255)

                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  2:226543/1‑91 (MQ=255)

                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  1:3209331/1‑91 (MQ=255)

                                              taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                              >  1:3542365/1‑91 (MQ=255)

                                                  aaaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATaataat                                          <  2:1829482/91‑1 (MQ=255)

                                                   aaaaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                         >  1:1403169/1‑91 (MQ=255)

                                                     aaCGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt                                       <  1:3825521/91‑1 (MQ=255)

                                                       cGCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttga                                     <  2:2884736‑M2/91‑56 (MQ=255)

                                                       cGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTc                                     <  2:768405/91‑1 (MQ=255)

                                                        gCTTCATATAAAGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaa                                    <  2:3159718‑M2/91‑57 (MQ=255)

                                                        gCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt                                    <  1:75790/91‑1 (MQ=255)

                                                         cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   <  1:2728978/91‑1 (MQ=255)

                                                         cTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   >  2:1286605/1‑91 (MQ=255)

                                                         cTTCATATAAAGGCCGAGTCAATATATGATACGACTCTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATtcttctc                                   >  2:1662819/1‑90 (MQ=255)

                                                         cTTCAGATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTa                                   <  2:3577373/91‑1 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  2:928918/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  2:565248/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:232832/1‑91 (MQ=255)

                                                          ttCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                  >  1:1724912/1‑91 (MQ=255)

                                                            cATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt                                <  2:1155512/91‑1 (MQ=255)

                                                            cATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAttt                                >  2:217197/1‑91 (MQ=255)

                                                             atatAAAGGTCGAGTCAATATATGATACGActttttatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatca                               <  2:3448024‑M2/91‑62 (MQ=255)

                                                             atatAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtc                               <  2:2485808/91‑1 (MQ=255)

                                                               ataAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtctc                             >  2:1973539/1‑91 (MQ=255)

                                                               ataAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtctc                             <  2:2450535/91‑1 (MQ=255)

                                                                taAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                            <  2:797934/91‑1 (MQ=255)

                                                                 aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta                           <  2:1185479‑M2/91‑66 (MQ=255)

                                                                 aaaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcattta                           <  1:1858340‑M2/91‑66 (MQ=255)

                                                                 aaaGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt                           <  1:214288/91‑1 (MQ=255)

                                                                  aaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaa                          <  1:523878‑M2/91‑67 (MQ=255)

                                                                  aaGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaa                          <  1:491829‑M2/91‑67 (MQ=255)

                                                                   aGGTCGAGTCAATATATGATACGActttatatgaagcgtttttattacaaacattcctctattgtatcttgtcatttgaacatcatttaat                         <  2:3690403‑M2/91‑68 (MQ=255)

                                                                   aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                         <  1:3759139/91‑1 (MQ=255)

                                                                   aGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTACTTCTCTTTc                         >  1:3718162/1‑91 (MQ=255)

                                                                    ggTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCg                        <  2:1038191/91‑1 (MQ=255)

                                                                     gTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGa                       <  1:2038459/91‑1 (MQ=255)

                                                                     gTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGa                       >  1:114560/1‑91 (MQ=255)

                                                                      tCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAt                      <  1:1471645/91‑1 (MQ=255)

                                                                      tCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAt                      >  2:3531738/1‑91 (MQ=255)

                                                                      tCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAt                      >  2:1559978/1‑91 (MQ=255)

                                                                      tCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAt                      >  2:3479174/1‑91 (MQ=255)

                                                                         aGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTg                   >  1:2585491/1‑91 (MQ=255)

                                                                          gTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTAGATTTGa                  >  1:1933321/1‑91 (MQ=255)

                                                                          gTCAATATATGATACGACTTTATATGAAGCGGTTTATTTGCTATGAGCTAGTATAGTTTATAATAATTTTTCTATTTCTCTTTCGATTTGa                  >  1:1030483/1‑91 (MQ=255)

                                                                           tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGaa                 >  2:1792031/1‑91 (MQ=255)

                                                                            cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                <  1:2672587/91‑1 (MQ=255)

                                                                            cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                <  1:3252458/91‑1 (MQ=255)

                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              >  1:3411249/1‑91 (MQ=255)

                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              <  2:39091/91‑1 (MQ=255)

                                                                              atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg              >  2:147626/1‑91 (MQ=255)

                                                                               tatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAgg             <  1:2808300/91‑1 (MQ=255)

                                                                               tatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAgg             <  1:118405/91‑1 (MQ=255)

                                                                                atatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGt            <  2:2679245/91‑1 (MQ=255)

                                                                                atatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGt            <  2:1376684/91‑1 (MQ=255)

                                                                                 tatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtt           <  1:3067457/91‑1 (MQ=255)

                                                                                 tatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtt           <  2:423179/91‑1 (MQ=255)

                                                                                 tatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtt           <  1:66041/91‑1 (MQ=255)

                                                                                 tatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtt           >  2:2021856/1‑91 (MQ=255)

                                                                                  atGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttt          >  2:2777035/1‑91 (MQ=255)

                                                                                   tGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttt         >  2:1546832/1‑91 (MQ=255)

                                                                                    gATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttt        <  1:217417/91‑1 (MQ=255)

                                                                                     aTACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttt       <  2:448167/91‑1 (MQ=255)

CAATTAAATGATGTTCAAATGACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAG  >  USA300TCH1516_ALE/1332881‑1333061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.