| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1341822 = | 270 (1.420) | 17 (0.100) | 9/148 | NT | 7.0% | intergenic (+230/‑282) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1341877 = | 202 (1.150) | intergenic (+285/‑227) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein | |||||
TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:1648760/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG < 2:2812420/91‑1TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:3457331/1‑91 TTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCA > 1:514390/1‑91 TCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAACGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCAT > 2:2949613/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:1269748/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:2309396/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:2309309/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:1443116/1‑91 TTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGTGAGCATTTTCATTAAATTGTTATAGCTTTTTATATT > 2:3830416/1‑91 TTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTT > 2:1178215/1‑91 GAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATA > 1:3321547/1‑91 GAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATA > 1:980448/1‑91 GAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATA > 1:977929/1‑91 GAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATACCTTTTTATATTTGTATA > 1:3319543/1‑91 AATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATG > 1:3159812/1‑91 GCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAC > 1:109255/1‑91 GCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAC > 2:582251/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 1:871298/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 2:101324/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 2:1142329/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 1:2568012/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 2:253954/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTCCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 2:3408738/1‑91 AGTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTA > 1:3115819/1‑91 GTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAA > 2:1800500/1‑91 CATCTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAA < 1:3005815/91‑1 ATTTTCATTAAATTGTTTTAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:1261619/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGGACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:3693778/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGGACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:3693761/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:1747518/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:1487891/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:299493/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG > 2:234186/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG < 2:2606264/91‑1 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG > 2:3578343/1‑91 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGT < 1:388185/91‑1 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGT < 1:387867/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:299493/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 2:299317/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:3720776/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:1620393/91‑1 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |