BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1341822 =	270 (1.420)	17 (0.100)	9/148	NT	7.0%	intergenic (+230/‑282)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1341877 =	202 (1.150)	17 (0.100)	9/148	NT	7.0%	intergenic (+285/‑227)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein

Only 100 of 287 total aligned reads displayed.

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

ttAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt                                                                                            >  1:3690886/1‑91 (MQ=255)

 tatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTc                                                                                           >  1:980448‑M1/35‑91 (MQ=255)

  aaaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCa                                                                                          >  1:2698344/1‑91 (MQ=255)

   aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt                                                                                         <  2:1470655/91‑1 (MQ=255)

    aTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAtt                                                                                        <  2:366416/91‑1 (MQ=255)

     tGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTa                                                                                       <  1:842154/91‑1 (MQ=255)

      aaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaa                                                                                      >  2:1178215‑M1/30‑91 (MQ=255)

       aatataaaaagctataacaatttaatgaAAATGCTCACTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  2:3830416‑M1/29‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTTAATTTCTACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  2:3795287/1‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  2:2929952/1‑91 (MQ=255)

       aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  1:539082/1‑91 (MQ=255)

         aaaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAtt                                                                                   >  2:488545/1‑91 (MQ=255)

          aaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTg                                                                                  <  2:2006883/91‑1 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  2:728571/91‑1 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 >  2:2747483/1‑91 (MQ=255)

            aaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGtt                                                                                >  1:1952640/1‑91 (MQ=255)

             aaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTta                                                                               <  1:2866407/91‑1 (MQ=255)

             aaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTta                                                                               >  2:3005815/1‑91 (MQ=255)

              aGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtat                                                                              >  1:3759625/1‑91 (MQ=255)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             >  1:2808559/1‑91 (MQ=255)

                  tGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCt                                                                          >  1:2498132/1‑91 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  2:3697840/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  2:3231386/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         >  2:3359521/1‑91 (MQ=255)

                    gAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttt                                                                        >  2:2189516/1‑91 (MQ=255)

                    gAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttt                                                                        >  2:2451534/1‑91 (MQ=255)

                     aaTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtttt                                                                       >  2:2834997/1‑91 (MQ=255)

                     aaTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtttt                                                                       <  2:2569854/91‑1 (MQ=255)

                     aaTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtttt                                                                       >  2:3343434/1‑91 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa                                                                                     >  2:2208925/1‑75 (MQ=255)

                         gATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTtata                                                                   >  2:1560282/1‑91 (MQ=255)

                         gATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTtata                                                                   >  2:361577/1‑91 (MQ=255)

                          aTCGTCTTGAAGTGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat                                                                  <  2:523377/91‑1 (MQ=255)

                          aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat                                                                  >  1:92824/1‑91 (MQ=255)

                           tCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAtt                                                                 <  2:585430/91‑1 (MQ=255)

                            cGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAttt                                                                >  1:355028/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               >  1:2778989/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               <  2:2092632/91‑1 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               >  1:480119/1‑91 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCATTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  2:1970022/91‑1 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  2:2859431/91‑1 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  1:1341425/91‑1 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  2:1627801/91‑1 (MQ=255)

                               cTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGta                                                             >  1:2630339/1‑91 (MQ=255)

                               cTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGta                                                             <  1:2678567/91‑1 (MQ=255)

                                ttGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtat                                                            <  2:1671256/91‑1 (MQ=255)

                                 gaaaatgcccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATACCTTTTTATATTTGtata                                                           >  1:3319543‑M2/58‑91 (MQ=255)

                                  gAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATaa                                                          <  1:137540/91‑1 (MQ=255)

                                    aatgcccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATg                                                        >  1:3159812‑M2/55‑91 (MQ=255)

                                    AATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATg                                                        >  1:1443116‑M1/1‑91 (MQ=255)

                                        cccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  1:2568012‑M2/51‑91 (MQ=255)

                                        cccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  2:101324‑M2/51‑91 (MQ=255)

                                        CTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  2:3457331‑M1/1‑91 (MQ=255)

                                            cTTCAAAGTTTTCATTTTTTCTTTTTTTTCTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAtata                                                >  2:1072921/1‑91 (MQ=38)

                                            cTTCAAAGTTTTCATTTTTTCATTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAtata                                                >  2:886904/1‑91 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  2:1263906/91‑1 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  2:1699772/91‑1 (MQ=255)

                                               cAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGt                                             <  1:1857253/91‑1 (MQ=255)

                                                aaaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGtt                                            <  1:1249519/91‑1 (MQ=255)

                                                 aaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGttt                                           <  2:2784362/91‑1 (MQ=255)

                                                 aaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGttt                                           >  1:21873/1‑91 (MQ=255)

                                                 aaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGttt                                           >  1:23497/1‑91 (MQ=255)

                                                 aaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGttt                                           >  2:2275246/1‑91 (MQ=255)

                                                 aaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGttt                                           <  1:796714/91‑1 (MQ=255)

                                                  agtcgacattgaaaaaatgaaaactttgaagggggcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTa                                          >  1:3115819‑M2/41‑91 (MQ=255)

                                                   gTTTTCATTTTTTCAATTTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaa                                         >  2:1812717/1‑91 (MQ=255)

                                                    ttttCATTTTTTCAGTGTCGACGTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaag                                        <  2:818182/91‑1 (MQ=255)

                                                    ttttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTGTATATTTGTATAATGAACATATAAGTTTaag                                        <  2:2954199/91‑1 (MQ=255)

                                                      ttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaa                                      <  2:3103018/91‑1 (MQ=255)

                                                      ttCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTCTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaa                                      >  1:3080546/1‑91 (MQ=255)

                                                       tCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaagaag                                     <  1:3528643/91‑1 (MQ=255)

                                                        cATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAgg                                    >  1:633017/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   >  1:3671551/1‑91 (MQ=255)

                                                          ttttttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTg                                  >  1:1209006/1‑91 (MQ=255)

                                                           tttttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGc                                 <  1:72704/91‑1 (MQ=255)

                                                              ttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAg                              <  1:3728150/91‑1 (MQ=255)

                                                               tCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGt                             <  1:2253339/91‑1 (MQ=255)

                                                                  aTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGaa                          >  1:3647096/1‑91 (MQ=255)

                                                                  aTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGaa                          >  2:1975447/1‑91 (MQ=255)

                                                                   tGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAg                         >  1:2068147/1‑91 (MQ=255)

                                                                   tGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAg                         <  1:1158266/91‑1 (MQ=255)

                                                                     tCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGa                       <  2:3421162/91‑1 (MQ=255)

                                                                     tCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGa                       <  1:1760102/91‑1 (MQ=255)

                                                                       gACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGaaa                     <  1:624494/91‑1 (MQ=255)

                                                                       gACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGaaa                     >  1:2265088/1‑91 (MQ=255)

                                                                         cTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATa                   <  2:1238710/91‑1 (MQ=255)

                                                                          ttCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATCATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaa                  <  1:3359242/91‑1 (MQ=255)

                                                                          ttCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaa                  >  2:1322095/1‑91 (MQ=255)

                                                                            cGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaa                <  1:1077576/91‑1 (MQ=255)

                                                                               aGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAg             >  2:641736/1‑91 (MQ=255)

                                                                                 ggggCATTTTCATTAAATTGTTATAGCTTTTTGTATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAGGGAAATAAAAAAGCt           <  1:3309322/91‑1 (MQ=255)

                                                                                  gggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTc          >  2:1769211/1‑91 (MQ=255)

                                                                                   ggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCa         >  1:1834271/1‑91 (MQ=255)

                                                                                   ggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCa         >  1:1787253/1‑91 (MQ=255)

                                                                                     catctTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCaaa       <  1:3005815‑M2/86‑1 (MQ=255)

                                                                                       tttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATg     >  2:3578343‑M2/4‑91 (MQ=255)

                                                                                        ttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGt    <  1:387867‑M2/89‑1 (MQ=255)

                                                                                         tTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTa   <  1:1620393‑M2/90‑1 (MQ=255)

                                                                                          tCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAc  >  1:2933715/1‑91 (MQ=255)

                                                                                          tCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAc  >  1:1049184/1‑91 (MQ=255)

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.