| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1380306 | 150 (0.790) | 18 (0.110) | 10/144 | NT | 10.7% | intergenic (+120/‑772) | opuD_1/acnA | Glycine betaine transporter OpuD/Aconitate hydratase A |
| ? | USA300TCH1516_ALE | = 1380322 | 166 (0.970) | intergenic (+136/‑756) | opuD_1/acnA | Glycine betaine transporter OpuD/Aconitate hydratase A | |||||
ATAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1380209‑1380306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaattCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCTA < USA300TCH1516_ALE/1380322‑1380233 ATAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAAC > 2:1476976/1‑91ATAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAAC > 2:1477167/1‑91ATAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAAC > 1:1777155/1‑91 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG > 1:994510/1‑91 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG < 1:1677331/91‑1 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG > 2:688709/1‑91 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG > 1:2299957/1‑91 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG > 1:2313352/1‑91 TAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG < 2:519518/91‑1 TAACAAGTAGTAAGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACG > 2:46034/1‑91 agCAAGTAGTATGTCATTCTAGTCGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA < 2:2965343/89‑1 agCAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA < 2:2962989/89‑1 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA > 1:2756621/1‑91 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA < 2:2371078/91‑1 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA > 1:1774911/1‑91 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA > 1:1774926/1‑91 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA < 1:3156504/91‑1 AACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGA < 2:454513/91‑1 ACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAG < 1:3831884/91‑1 ACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAG < 2:2243218/91‑1 taatTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGA > 1:1035828/5‑91 CAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGA > 1:1577113/1‑91 AAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAA < 1:2705044/91‑1 AGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAAT < 2:2028227/91‑1 AGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCG > 2:2774784/1‑91 AGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACG < 1:2471546/91‑1 GTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGA < 2:1353297/91‑1 GTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGA < 2:1353219/91‑1 TAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAA < 1:2872264/91‑1 AGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAA < 2:2543434/91‑1 AGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAA < 1:1477406/91‑1 GCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAAT < 2:1140348/91‑1 GCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAAT < 2:1289519/91‑1 GCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAAT < 2:1289644/91‑1 GCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAAT < 2:1289961/91‑1 TAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTC < 2:2886072/91‑1 TAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTC < 1:2153882/91‑1 ACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGT < 1:394068/91‑1 AGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGTTC < 2:345722/91‑1 AGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGTTC < 1:2393057/91‑1 TACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATC < 1:3129890/91‑1 TACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATC < 1:3129760/91‑1 TACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTT < 1:2774784/91‑1 CGAGAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTT > 2:2209379/1‑91 CGAGAATTCGTAGTTTAATAACGAAATTCTCGTACTTATCCTTTTGAATATACTCAATTATCCACAAAAACAAACAAGTAGTATATCTGTT < 1:3443921/91‑1 AGAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCT > 1:763619/1‑91 GAATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTA > 2:3346364/1‑91 ATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGC < 1:739204/91‑1 ATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGC < 1:737864/91‑1 ATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGC < 1:2810110/91‑1 ATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGC < 1:2809546/91‑1 ATTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGC > 1:1981473/1‑91 TTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCT > 1:908047/1‑91 TTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCT < 1:3385567/91‑1 TTCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCT < 2:816659/91‑1 TCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCTA > 1:3453958/1‑91 ATAACAAGTAGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1380209‑1380306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagaattCGTAGTTTAATAACGAAATTCTCGTTCTTATCCTTTTGAATATACTCAATTTTCCACAAAAACAAACAAGTAGTATATCTGTTCTAGCTA < USA300TCH1516_ALE/1380322‑1380233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |