BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1380306	150 (0.790)	18 (0.110)	10/144	NT	10.7%	intergenic (+120/‑772)	opuD_1/acnA	Glycine betaine transporter OpuD/Aconitate hydratase A
*	?	USA300TCH1516_ALE	= 1380322	166 (0.970)	18 (0.110)	10/144	NT	10.7%	intergenic (+136/‑756)	opuD_1/acnA	Glycine betaine transporter OpuD/Aconitate hydratase A

Only 100 of 216 total aligned reads displayed.

GTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGT  >  USA300TCH1516_ALE/1380232‑1380412

gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                                            >  2:1146349/1‑91 (MQ=255)

gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                                            >  1:1889291/1‑91 (MQ=255)

gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                                            <  1:2375691/91‑1 (MQ=255)

  aGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaa                                                                                          >  1:908047‑M2/1‑89 (MQ=255)

   gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaat                                                                                         >  1:1981473‑M2/1‑88 (MQ=255)

   gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaat                                                                                         <  1:2809546‑M2/91‑4 (MQ=255)

   gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaat                                                                                         <  1:739204‑M2/91‑4 (MQ=255)

        aaCAGATATACTACTTGTTTGTTTTTGTGGATAATTGAGTATATTCAAAAGGATAAGTACGAGAATTTCGTTATTAAACTACGaattctcg                                                                                    <  1:3443921‑M2/91‑9 (MQ=255)

              tataCTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttt                                                                              >  1:3539117/1‑91 (MQ=255)

               ataCTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTACCAAACTACGAATTCTCGAtttttt                                                                             >  2:3609183/1‑91 (MQ=255)

                tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                                            <  2:3235888/91‑1 (MQ=255)

                tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                                            >  1:3334632/1‑91 (MQ=255)

                tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                                            >  1:708088/1‑91 (MQ=255)

                 actactTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTta                                                                           >  2:470573/1‑91 (MQ=255)

                 actactTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTta                                                                           >  2:204523/1‑91 (MQ=255)

                       tgtttgttTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATAtttt                                                                     <  1:3827864/91‑1 (MQ=255)

                        gtttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTa                                                                    >  1:794695/1‑91 (MQ=255)

                        gtttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTa                                                                    >  1:795743/1‑91 (MQ=255)

                         tttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTaa                                                                   >  1:2059902/1‑91 (MQ=255)

                          ttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAg                                                                  >  2:1160525/1‑91 (MQ=255)

                           tgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGa                                                                 <  1:2400979/91‑1 (MQ=255)

                           tgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGa                                                                 <  1:842559/91‑1 (MQ=255)

                               tttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAgg                                                             <  2:2369821/91‑1 (MQ=255)

                                ttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGt                                                            <  2:1824453/91‑1 (MQ=255)

                                ttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGt                                                            <  2:3859870/91‑1 (MQ=255)

                                  gtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGttt                                                          >  2:2866947/1‑91 (MQ=255)

                                  gtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGttt                                                          >  1:3680302/1‑91 (MQ=255)

                                   tgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTa                                                         <  1:608651/91‑1 (MQ=255)

                                    ggAAACTTGAGTATATTCAAAAGGACAAGAACGAGAATTGCGTTATTAAACTAGGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAt                                                        <  1:3608020/91‑1 (MQ=255)

                                     gAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAtt                                                       >  2:19833/1‑91 (MQ=255)

                                     gAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAtt                                                       <  1:2694398/91‑1 (MQ=255)

                                       aaaTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTc                                                     <  2:3564865/91‑1 (MQ=255)

                                         aTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTg                                                   <  1:585351/91‑1 (MQ=255)

                                         aTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTg                                                   <  2:1576070/91‑1 (MQ=255)

                                         aTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTg                                                   <  1:2126463/91‑1 (MQ=255)

                                          ttGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGa                                                  <  2:2764081/91‑1 (MQ=255)

                                          ttGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGa                                                  <  2:1914016/91‑1 (MQ=255)

                                            gAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGaaa                                                >  2:3668560/1‑91 (MQ=255)

                                              gTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAAc                                              >  2:1601211/1‑91 (MQ=255)

                                               tataTTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACt                                             >  2:3498839/1‑91 (MQ=255)

                                               tataTTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACt                                             <  1:1070951/91‑1 (MQ=255)

                                                atatTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACtt                                            <  1:2061421/91‑1 (MQ=255)

                                                  atTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTaa                                          <  1:2879862/91‑1 (MQ=255)

                                                   ttCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAAt                                         >  1:544252/1‑91 (MQ=255)

                                                   ttCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAAt                                         >  1:2473922/1‑91 (MQ=255)

                                                    tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                                        <  2:2608763/91‑1 (MQ=255)

                                                    tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                                        <  2:2231847/91‑1 (MQ=255)

                                                    tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                                        <  1:1827849/91‑1 (MQ=255)

                                                     cAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAg                                       >  2:3349295/1‑91 (MQ=255)

                                                      aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                                      <  2:232441/91‑1 (MQ=255)

                                                      aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                                      <  2:1485219/91‑1 (MQ=255)

                                                      aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                                      <  1:1357962/91‑1 (MQ=255)

                                                       aaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGaa                                     <  1:902735/91‑1 (MQ=255)

                                                        aaGGATAAGAACGAGAATTTCGTTATTAAGCTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGaaa                                    <  1:3107362/91‑1 (MQ=255)

                                                         aGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAg                                   <  2:607887/91‑1 (MQ=255)

                                                          ggATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAgg                                  >  2:2104989/1‑91 (MQ=255)

                                                          ggATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTCTATATTTTAAGATAGGTTTATTTCTGAAACCTTAATAGAAAgg                                  >  1:3879324/1‑91 (MQ=255)

                                                           gATAAGAACGAGAATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagta                                 <  1:3129890‑M2/91‑60 (MQ=255)

                                                           gATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAggg                                 >  2:3325377/1‑91 (MQ=255)

                                                            aTAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAgggg                                >  2:2266425/1‑91 (MQ=255)

                                                             tAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGt                               >  2:672549/1‑91 (MQ=255)

                                                             tAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGt                               >  2:2213797/1‑91 (MQ=255)

                                                             tAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGt                               <  1:1270611/91‑1 (MQ=255)

                                                              aaGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGtt                              >  2:2407912/1‑91 (MQ=255)

                                                              aaGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGtt                              >  2:2037571/1‑91 (MQ=255)

                                                               aGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGttt                             >  1:284787/1‑91 (MQ=255)

                                                               aGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGttt                             >  1:1172572/1‑91 (MQ=255)

                                                                gAACGAGAATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatct                            <  2:345722‑M2/91‑65 (MQ=255)

                                                                gAACGAGAATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatct                            <  1:2393057‑M2/91‑65 (MQ=255)

                                                                  aCGAGAATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgt                          <  1:394068‑M2/91‑67 (MQ=255)

                                                                     agaATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACaaa                       <  1:3225940/91‑1 (MQ=255)

                                                                      gaATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttcta                      <  1:2153882‑M2/91‑71 (MQ=255)

                                                                       aaTTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGc                     <  2:807432/91‑1 (MQ=255)

                                                                       aaTTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGc                     >  2:1657157/1‑91 (MQ=255)

                                                                       aaTTTCGTTATTAAACTACGAATTCGCGATTTTTTTATATTTTAAGATAGGTTTATGTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGc                     <  2:3680071/91‑1 (MQ=255)

                                                                        aTTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc                    <  2:1289961‑M2/91‑73 (MQ=255)

                                                                        aTTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc                    <  2:1289519‑M2/91‑73 (MQ=255)

                                                                         tttCGTTATTACACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTa                   <  1:3510585/91‑1 (MQ=255)

                                                                         tttCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct                   <  2:2543434‑M2/91‑74 (MQ=255)

                                                                         tttCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct                   <  1:1477406‑M2/91‑74 (MQ=255)

                                                                         tttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGa                           >  2:756095/1‑83 (MQ=255)

                                                                          ttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaa                  >  2:1134003/1‑91 (MQ=255)

                                                                          ttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaa                  >  1:1297134/1‑91 (MQ=255)

                                                                          ttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaa                  >  2:1278803/1‑91 (MQ=255)

                                                                           tCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagctac                 <  2:1353297‑M2/91‑76 (MQ=255)

                                                                           tCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaaa                 >  2:3061278/1‑91 (MQ=255)

                                                                           tCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaaa                 <  2:381696/91‑1 (MQ=255)

                                                                           tCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaaa                 >  2:2373134/1‑91 (MQ=255)

                                                                            cGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAg                >  2:320187/1‑91 (MQ=255)

                                                                               tattaAACTACGAATTCTCGATTTTTTTATATTTTAAGATATGTTTATTTCTGAAAACTTAATAGTAAGGGGTTTGACAAAGCTAAAGTGa             >  2:175596/1‑91 (MQ=255)

                                                                               tattaAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGa             <  1:2765453/91‑1 (MQ=255)

                                                                               tattaAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGa             <  1:1898086/91‑1 (MQ=255)

                                                                                attaAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGaa            <  2:2809546/91‑1 (MQ=255)

                                                                                 ttaAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAg           <  1:812992/91‑1 (MQ=255)

                                                                                 ttaAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAg           <  1:3145141/91‑1 (MQ=255)

                                                                                     aCTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTg       >  1:2894286/1‑91 (MQ=255)

                                                                                      cTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGa      <  2:243159/91‑1 (MQ=255)

                                                                                       tACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGAc     >  1:147075/1‑91 (MQ=255)

                                                                                        aCGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACg    <  1:545018/91‑1 (MQ=255)

                                                                                         cGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACgg   >  2:1227171/1‑91 (MQ=255)

GTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAAAGTGAAGTTTGACGGT  >  USA300TCH1516_ALE/1380232‑1380412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.