BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1380306	150 (0.790)	18 (0.110)	10/144	NT	10.7%	intergenic (+120/‑772)	opuD_1/acnA	Glycine betaine transporter OpuD/Aconitate hydratase A
*	?	USA300TCH1516_ALE	= 1380322	166 (0.970)	18 (0.110)	10/144	NT	10.7%	intergenic (+136/‑756)	opuD_1/acnA	Glycine betaine transporter OpuD/Aconitate hydratase A

Only 100 of 232 total aligned reads displayed.

AGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAA  >  USA300TCH1516_ALE/1380218‑1380396

agtaTGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTc                                                                                          >  2:3058821/1‑91 (MQ=255)

 gtaTGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCg                                                                                         <  2:3344679/91‑1 (MQ=255)

 gtaTGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCg                                                                                         >  2:3322888/1‑91 (MQ=255)

    tGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGtta                                                                                      <  1:125438/91‑1 (MQ=255)

    tGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGtta                                                                                      <  2:3581700/91‑1 (MQ=255)

     gTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTTTTTTTTTTTTAGTATATTCAAAAGGATAAGAACGAGAATTTCGtttt                                                                                     >  2:2627659/1‑89 (MQ=255)

     gTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGttat                                                                                     >  2:484542/1‑91 (MQ=255)

       cATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGATAATTGAGTATATTCAAAAGGATCAGAACGAGAATTTCGttatta                                                                                   >  2:1059114/1‑91 (MQ=255)

         ttCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTaaa                                                                                 >  2:2689968/1‑91 (MQ=255)

             agtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacg                                                                             <  1:2471546‑M1/91‑16 (MQ=255)

              gtagCTAGAACAGTTATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                            <  1:3885356/91‑1 (MQ=255)

              gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacga                                                                            <  2:1353297‑M1/91‑17 (MQ=255)

              gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                            >  2:1146349/1‑91 (MQ=255)

              gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                            >  1:1889291/1‑91 (MQ=255)

              gtagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACg                                                                            <  1:2375691/91‑1 (MQ=255)

               tagCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaa                                                                           <  1:2872264‑M1/91‑18 (MQ=255)

                aGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaa                                                                          <  1:3385567‑M2/91‑3 (MQ=255)

                 gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaat                                                                         <  2:1140348‑M1/91‑20 (MQ=255)

                 gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaat                                                                         <  1:737864‑M2/91‑4 (MQ=255)

                 gCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaat                                                                         <  1:2810110‑M2/91‑4 (MQ=255)

                   tAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattc                                                                       <  2:2886072‑M1/91‑22 (MQ=255)

                    aGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaattct                                                                      >  1:763619‑M2/1‑85 (MQ=255)

                      aaCAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGaattctcg                                                                    >  2:2209379‑M2/1‑83 (MQ=255)

                         aGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattctcgttc                                                                 <  1:2393057‑M1/91‑28 (MQ=255)

                         aGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattctcgttc                                                                 <  2:345722‑M1/91‑28 (MQ=255)

                            tataCTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttt                                                              >  1:3251245/1‑91 (MQ=255)

                            tataCTACTTGTTTGTTTTTGTGGAAAATTGAGTATACTCAAAAGGCTAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttt                                                              >  1:3094252/1‑91 (MQ=255)

                              tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattctcgttcttatc                                                            <  1:3129760‑M1/91‑33 (MQ=255)

                              tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattctcgttcttatc                                                            <  1:3129890‑M1/91‑33 (MQ=255)

                              tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                            >  1:708088/1‑91 (MQ=255)

                              tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                            <  2:3235888/91‑1 (MQ=255)

                              tactacTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGAttttttt                                                            >  1:3334632/1‑91 (MQ=255)

                                 tactTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTcgtagtttaataacgaaattctcgttcttatcctt                                                         <  1:2774784‑M1/91‑36 (MQ=255)

                                  actTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTatat                                                        >  2:360067/1‑91 (MQ=255)

                                     tgtttgttTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATAtttt                                                     <  1:3513904/91‑1 (MQ=255)

                                     tgtttgttTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATAtttt                                                     <  1:3827864/91‑1 (MQ=255)

                                      gtttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTa                                                    >  1:795027/1‑91 (MQ=255)

                                       tttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTaa                                                   >  1:2060033/1‑91 (MQ=255)

                                        ttgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAg                                                  >  2:1160525/1‑91 (MQ=255)

                                         tgtttTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGa                                                 <  1:842559/91‑1 (MQ=255)

                                           tttttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATa                                               <  2:3464929/91‑1 (MQ=255)

                                            ttttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAg                                              >  1:17047/1‑91 (MQ=255)

                                             tttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGTATTTCGTTATTAAACTACTAATTCTCGATTTTTTTATATTTTAAGATAgg                                             <  2:2370353/91‑1 (MQ=255)

                                              ttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGt                                            <  2:1824453/91‑1 (MQ=255)

                                              ttGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGt                                            <  2:757714/91‑1 (MQ=255)

                                               tgtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACt                                                                               >  2:2389588/1‑55 (MQ=255)

                                                gtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGttt                                          >  1:2393685/1‑91 (MQ=255)

                                                gtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGttt                                          >  1:3680302/1‑91 (MQ=255)

                                                gtgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGttt                                          >  2:2866947/1‑91 (MQ=255)

                                                 tgGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTa                                         <  1:607808/91‑1 (MQ=255)

                                                  ggAAACTTGAGTATATTCAAAAGGACAAGAACGAGAATTGCGTTATTAAACTAGGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAt                                        <  1:3608020/91‑1 (MQ=255)

                                                   gAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAtt                                       >  2:19833/1‑91 (MQ=255)

                                                   gAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAtt                                       <  1:2694398/91‑1 (MQ=255)

                                                   gAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAtt                                       >  1:471009/1‑91 (MQ=255)

                                                    aaaaTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAttt                                      >  2:3556345/1‑91 (MQ=255)

                                                    aaaaTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTAttt                                      <  1:128513/91‑1 (MQ=255)

                                                     aaaTTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTc                                     <  1:3148827/91‑1 (MQ=255)

                                                        ttGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGa                                  <  2:1914016/91‑1 (MQ=255)

                                                          gAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGaaa                                >  2:3668560/1‑91 (MQ=255)

                                                           aGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGaaaa                               >  2:2206651/1‑91 (MQ=255)

                                                            gTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAAc                              >  2:1601211/1‑91 (MQ=255)

                                                             tataTTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACt                             <  1:1070951/91‑1 (MQ=255)

                                                                atTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTaa                          <  1:2879862/91‑1 (MQ=255)

                                                                 ttCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAAt                         <  2:2029370/91‑1 (MQ=255)

                                                                  tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                        <  1:2149641/91‑1 (MQ=255)

                                                                  tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                        <  2:2608763/91‑1 (MQ=255)

                                                                  tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                        <  2:2231847/91‑1 (MQ=255)

                                                                  tCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATa                        <  1:1827849/91‑1 (MQ=255)

                                                                   cAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAg                       >  2:3349295/1‑91 (MQ=255)

                                                                    aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                      <  2:1485219/91‑1 (MQ=255)

                                                                    aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                      <  1:1357962/91‑1 (MQ=255)

                                                                    aaaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGa                      <  2:232441/91‑1 (MQ=255)

                                                                     aaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGaa                     <  1:902735/91‑1 (MQ=255)

                                                                     aaaGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGaa                     <  2:389878/91‑1 (MQ=255)

                                                                       aGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAg                   <  2:607887/91‑1 (MQ=255)

                                                                          aTAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAgggg                >  2:2266425/1‑91 (MQ=255)

                                                                          aTAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAgggg                <  1:1472957/91‑1 (MQ=255)

                                                                            aaGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGtt              >  2:2407912/1‑91 (MQ=255)

                                                                             aGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGttt             >  1:1172572/1‑91 (MQ=255)

                                                                             aGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGttt             >  2:1348909/1‑91 (MQ=255)

                                                                                aCGAGAATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgt          <  1:394068‑M2/91‑67 (MQ=255)

                                                                                    gaATTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttcta      <  1:2153882‑M2/91‑71 (MQ=255)

                                                                                    gaATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAg      <  2:749334/91‑1 (MQ=255)

                                                                                     aaTTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGc     >  2:1657157/1‑91 (MQ=255)

                                                                                     aaTTTCGTTATTAAACTACGAATTCGCGATTTTTTTATATTTTAAGATAGGTTTATGTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGc     <  2:3680071/91‑1 (MQ=255)

                                                                                      aTTcgtagtttaataacgaaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc    >  1:1981473‑M1/1‑3 (MQ=255)

                                                                                      aTTcgtagtttaataacgaaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc    <  1:2809546‑M1/91‑89 (MQ=255)

                                                                                      aTTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc    <  2:1289644‑M2/91‑73 (MQ=255)

                                                                                      aTTTCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagc    <  2:1289519‑M2/91‑73 (MQ=255)

                                                                                       tttCGTTATTACACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTa   <  1:3510585/91‑1 (MQ=255)

                                                                                       tttCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct   <  2:2543434‑M2/91‑74 (MQ=255)

                                                                                       tttCGTTATTAAACTACGaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct   <  1:1477406‑M2/91‑74 (MQ=255)

                                                                                       tttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGa           <  1:756095/83‑1 (MQ=255)

                                                                                       tttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTa   >  2:2101768/1‑91 (MQ=255)

                                                                                       tttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTa   >  1:2005596/1‑91 (MQ=255)

                                                                                       tttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTa   >  2:3818655/1‑91 (MQ=255)

                                                                                       ttcgtagtttaataacgaaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct   >  1:908047‑M1/1‑2 (MQ=255)

                                                                                       ttcgtagtttaataacgaaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagct   <  2:816659‑M1/91‑90 (MQ=255)

                                                                                        ttCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTaa  >  2:1278980/1‑91 (MQ=255)

                                                                                        tcgtagtttaataacgaaattctcgttcttatccttttgaatatactcaattttccacaaaaacaaacaagtagtatatctgttctagcta  >  1:3453958‑M1/1‑1 (MQ=255)

AGTATGTCATTCTAGTAGCTAGAACAGATATACTACTTGTTTGTTTTTGTGGAAAATTGAGTATATTCAAAAGGATAAGAACGAGAATTTCGTTATTAAACTACGAATTCTCGATTTTTTTATATTTTAAGATAGGTTTATTTCTGAAAACTTAATAGAAAGGGGTTTGACAAAGCTAA  >  USA300TCH1516_ALE/1380218‑1380396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.