| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1425261 = | 204 (1.070) | 15 (0.080) | 10/150 | NT | 7.8% | intergenic (‑166/+25) | pstC1/pstS | Phosphate transport system permease protein PstC 1/Phosphate‑binding protein PstS |
| ? | USA300TCH1516_ALE | 1425285 = | 164 (0.920) | intergenic (‑190/+1) | pstC1/pstS | Phosphate transport system permease protein PstC 1/Phosphate‑binding protein PstS | |||||
ATTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1425355‑1425261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcttATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAATT > USA300TCH1516_ALE/1425285‑1425374 ATTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTG > 2:2733131/1‑91ATTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTG < 1:2286953/91‑1 TTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGT > 2:1319481/1‑91 TTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGT > 1:3605750/1‑91 TTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTC > 2:3724996/1‑91 TTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTATGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTC < 2:3163386/91‑1 TATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCT > 2:1517027/1‑91 TATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCT > 2:2902735/1‑91 TATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCT > 2:136543/1‑91 TATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCT > 1:491452/1‑91 TATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCT > 1:491101/1‑91 ATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCTT < 1:174494/91‑1 TTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACACATTTGAAAT‑TGCGTCTTA < 1:1337242/91‑1 ATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTA < 2:565948/91‑1 ATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTA < 1:3819165/91‑1 ATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTA < 2:343393/91‑1 AAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACACATTTGAAAT‑TGCGTCTTATTATT < 2:3247188/91‑1 AAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATT < 1:3636204/91‑1 AAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATT < 2:1921144/91‑1 AAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATTT < 1:1477660/91‑1 AAAATCAAAAAACAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATTT < 2:3575810/91‑1 AAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACACATTTGAAAT‑TGCGTCTTATTATTTT < 1:2959553/91‑1 ATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATTTTTT < 2:135858/91‑1 ATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACACATTTGAAAT‑TGCGTCTTATTATTTTTTGTCTTCA < 1:2430182/91‑1 CGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACAC‑ATTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTT < 2:128123/91‑1 AAATAATAAGACGCAATTTCAAA‑TGTGTCTTATTATTTTTTGTATTCAGACTTCTTATCATAAGCTTTCTTTTCGTCTGATATTTGATTTT > 2:3290295/1‑91 AATAAGACGCAATTTCAAA‑TGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATC > 1:604857/1‑91 TAAGACGCAATTTCAAA‑TGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAA > 2:801070/1‑91 TAAGACGCAATTTCAAA‑TGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAA > 1:311253/1‑91 TAAGACGCAATTTCAAA‑TGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAA > 2:801274/1‑91 CAAA‑TGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAA > 1:2686597/1‑91 GTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCT < 1:1377813/91‑1 TCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTA < 2:3043536/91‑1 TCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTA > 2:1209620/1‑91 TCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTA > 1:3811193/1‑91 TCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTA > 1:2559398/1‑91 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 2:2285113/91‑1 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 2:1366375/91‑1 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 2:3173499/91‑1 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA > 1:970531/1‑91 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA > 1:970050/1‑91 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 1:3422475/91‑1 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 2:793470/91‑1 CTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAA < 1:3422366/91‑1 TTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAAT < 2:2991039/91‑1 TTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAAT < 1:3858258/91‑1 TATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAATT < 1:916613/91‑1 ATTTATTGATAAAAATCAAAAATCAGACGACAAGAAATCTGATGATAAAAAGTCTGAAGACAAAAAATAATAAGACGCAATTTCAAA‑TGTGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1425355‑1425261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcttATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAATAAATGCTTTTAAATCATCTAATT > USA300TCH1516_ALE/1425285‑1425374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |