BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1425261 =	204 (1.070)	15 (0.080)	10/150	NT	7.8%	intergenic (‑166/+25)	pstC1/pstS	Phosphate transport system permease protein PstC 1/Phosphate‑binding protein PstS
*	?	USA300TCH1516_ALE	1425285 =	164 (0.920)	15 (0.080)	10/150	NT	7.8%	intergenic (‑190/+1)	pstC1/pstS	Phosphate transport system permease protein PstC 1/Phosphate‑binding protein PstS

Only 100 of 267 total aligned reads displayed.

AGCTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAAT  >  USA300TCH1516_ALE/1425171‑1425351

aGCTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCa                                                                                             >  1:518832/1‑91 (MQ=255)

aGCTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCa                                                                                             >  1:324290/1‑91 (MQ=255)

aGCTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCa                                                                                             >  2:445246/1‑91 (MQ=255)

 attagatgatttaaaagcatttattgataaaaatcaaaaatcagacgacaagaaatctgatgataaaaagtctgaagacaaaaaataataa                                                                                            <  1:3858258‑M1/2‑1 (MQ=255)

  ttagatgatttaaaagcatttattgataaaaatcaaaaatcagacgacaagaaatctgatgataaaaagtctgaagacaaaaaataatAAg                                                                                           <  2:3173499‑M1/3‑1 (MQ=255)

  cTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAg                                                                                           <  2:1886946/91‑1 (MQ=255)

   ttGTAGACTAGCTGAATGTCAAAATCAGCGTCTCGATTCATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGa                                                                                          <  2:2495591/91‑1 (MQ=255)

   tagatgatttaaaagcatttattgataaaaatcaaaaatcagacgacaagaaatctgatgataaaaagtctgaagacaaaaaataatAAGa                                                                                          >  1:2559398‑M1/88‑91 (MQ=255)

    agatgatttaaaagcatttattgataaaaatcaaaaatcagacgacaagaaatctgatgataaaaagtctgaagacaaaaaataatAAGac                                                                                         <  1:1377813‑M1/5‑1 (MQ=255)

     gTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGaca                                                                                        >  1:1265267/1‑91 (MQ=255)

     gTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGaca                                                                                        >  2:2758803/1‑91 (MQ=255)

       aGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGAcaca                                                                                      <  2:2003767/91‑1 (MQ=255)

        gACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑t                                                                                    >  1:2362699/1‑91 (MQ=255)

        gACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑t                                                                                    >  1:2362398/1‑91 (MQ=255)

         aCTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑tt                                                                                   <  1:2474245/91‑1 (MQ=255)

          cTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑ttt                                                                                  >  1:3757228/1‑91 (MQ=255)

          cTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑ttt                                                                                  >  1:3043536/1‑91 (MQ=255)

           tAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCTAGACACA‑TTTg                                                                                 >  1:3521360/1‑91 (MQ=255)

           tAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTg                                                                                 <  2:745943/91‑1 (MQ=255)

            aaCTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGa                                                                                <  2:3542432/91‑1 (MQ=255)

            aaCTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGa                                                                                <  2:1538004/91‑1 (MQ=255)

            aaCTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGCACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGa                                                                                >  1:3367595/1‑91 (MQ=255)

             aCTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGaa                                                                               >  2:417472/1‑91 (MQ=255)

              cTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGaaa                                                                              >  1:633719/1‑91 (MQ=255)

                  aTGTCAAAATCAGCGTCTCGATCAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGc                                                                          >  1:1752278/1‑91 (MQ=255)

                  aTGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAATACACA‑TTTGAAATTGc                                                                          >  2:3712753/1‑91 (MQ=255)

                      cAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCt                                                                      >  1:897023/1‑91 (MQ=255)

                      cAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCt                                                                      >  1:426086/1‑91 (MQ=255)

                        ttgataaaaatcaaaaatcagacgacaagaaatctgatgataaaaagtctgaagacaaaaaataatAAGACACA‑TTTGAAATTGCGTCtta                                                                    >  2:801070‑M1/67‑91 (MQ=255)

                        aaaTCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCtta                                                                    <  1:2077221/91‑1 (MQ=255)

                        aaaTCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCtta                                                                    <  1:977874/91‑1 (MQ=255)

                         aaTCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCttat                                                                   <  1:1929655/91‑1 (MQ=255)

                         aaTCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCttat                                                                   >  1:189474/1‑91 (MQ=255)

                          aTCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCttatt                                                                  >  2:802771/1‑91 (MQ=255)

                           tCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCttatta                                                                 <  2:3263600/91‑1 (MQ=255)

                              gCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAttt                                                              <  1:3138702/91‑1 (MQ=255)

                              gCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAttt                                                              >  1:1329414/1‑91 (MQ=255)

                               cGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAtttt                                                             >  2:491452/1‑91 (MQ=255)

                               cGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAtttt                                                             >  2:2603533/1‑91 (MQ=255)

                                ttctcGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAttttt                                                            <  2:3850363/90‑1 (MQ=255)

                                gTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTAttttt                                                            >  2:526644/1‑91 (MQ=255)

                                   tcGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGt                                                         <  1:534363/91‑1 (MQ=255)

                                    cGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTc                                                        >  1:3698561/1‑91 (MQ=255)

                                     gATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCt                                                       <  1:420047/91‑1 (MQ=255)

                                     gATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCt                                                       <  1:1634354/91‑1 (MQ=255)

                                     gATAAATCAAGCTTTGGACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCt                                                       <  2:3704862/91‑1 (MQ=255)

                                       tAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTc                                                     <  1:1574905/91‑1 (MQ=255)

                                       tAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTc                                                     <  2:1712135/91‑1 (MQ=255)

                                        aaaTCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCa                                                    >  2:1621322/1‑91 (MQ=255)

                                         aaTCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAg                                                   <  1:1878506/91‑1 (MQ=255)

                                           tCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGAc                                                 <  1:59482/91‑1 (MQ=255)

                                            cAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACt                                                <  1:959898/91‑1 (MQ=255)

                                             aaGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACtt                                               >  1:2248700/1‑91 (MQ=255)

                                             aaGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACtt                                               <  2:123132/91‑1 (MQ=255)

                                              aGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACttt                                              >  1:671359/1‑91 (MQ=255)

                                              aGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACttt                                              >  1:285689/1‑91 (MQ=255)

                                              aGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACttt                                              >  2:2277311/1‑91 (MQ=255)

                                                 tttGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTa                                           <  2:1175313/91‑1 (MQ=255)

                                                   tGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatc                                         >  1:1226096/1‑91 (MQ=255)

                                                    gTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatca                                        <  2:1070165/91‑1 (MQ=255)

                                                    gTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatca                                        >  1:2602858/1‑91 (MQ=255)

                                                     tACTCTAAGTAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTGTTATTTTTTGTCTTCAGACTTTTTatcat                                       <  2:3375086/91‑1 (MQ=255)

                                                      aCTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatcatc                                      >  1:2299872/1‑91 (MQ=255)

                                                      aCTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatcatc                                      <  2:1783318/91‑1 (MQ=255)

                                                      aCTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTatcatc                                      >  1:3428943/1‑91 (MQ=255)

                                                      aCTCTAAATAATGATTCACCATC‑AAATCATGTTTCAAGACACA‑TTTGGAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTAtcatca                                     <  2:3000379/91‑1 (MQ=255)

                                                         ctAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGa                                   <  2:1450610/91‑1 (MQ=255)

                                                         ctAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGa                                   <  1:1340902/91‑1 (MQ=255)

                                                           aaaTAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGAtt                                 <  2:1843724/91‑1 (MQ=255)

                                                            aataatGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGAttt                                >  2:2688228/1‑91 (MQ=255)

                                                            aataatGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGAttt                                <  1:3386906/91‑1 (MQ=255)

                                                              taatGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCt                              >  2:3500399/1‑91 (MQ=255)

                                                                atGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTg                            >  2:1689290/1‑91 (MQ=255)

                                                                   aaagtctgaagacaaaaaataatAAGACGCAATTTCAAAT‑GTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTgtcg                         <  2:128123‑M1/68‑1 (MQ=255)

                                                                   aTTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTgtcg                         <  2:3620279/91‑1 (MQ=255)

                                                                   aTTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTgtcg                         >  1:2001266/1‑91 (MQ=255)

                                                                   aTTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCCTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTgtcg                         >  2:88641/1‑91 (MQ=255)

                                                                     tCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTgtcgtc                       >  2:2981996/1‑91 (MQ=255)

                                                                      cACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCt                      <  1:1473268/91‑1 (MQ=255)

                                                                      cACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCt                      >  2:2396917/1‑91 (MQ=255)

                                                                       aCCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtg                     <  1:445246/91‑1 (MQ=255)

                                                                       aCCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtg                     <  2:1198757/91‑1 (MQ=255)

                                                                          aTCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTTTTCATTCTTTTTATCATCAGATTTCTTGTCGTCtgatt                  >  2:1384236/1‑91 (MQ=255)

                                                                          aTCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatt                  <  1:711221/91‑1 (MQ=255)

                                                                             aaaaTCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgattttt               <  2:2044736/91‑1 (MQ=255)

                                                                             aaaaTCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgattttt               <  1:1412964/91‑1 (MQ=255)

                                                                             aaaaTCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgattttt               <  1:1049639/91‑1 (MQ=255)

                                                                              aaaTCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttg              >  2:1402054/1‑91 (MQ=255)

                                                                                aTCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttgat            >  2:1325889/1‑91 (MQ=255)

                                                                                 tCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttgatt           >  1:2834037/1‑91 (MQ=255)

                                                                                  aaaataatAAGACGCA‑ATTTCAAATGTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttgattt          <  1:2959553‑M1/83‑1 (MQ=255)

                                                                                   aTGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttgatttt         >  2:1572552/1‑91 (MQ=255)

                                                                                   aTGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCtgatttttgatttt         >  1:1186671/1‑91 (MQ=255)

                                                                                    aataatAAGACGCAATTTCAAAT‑GTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTgatttttgattttt        <  2:1921144‑M1/85‑1 (MQ=255)

                                                                                    aataatAAGACGCAATTTCAAAT‑GTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTgatttttgattttt        <  1:3636204‑M1/85‑1 (MQ=255)

                                                                                      tttCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTAt      <  2:626285/91‑1 (MQ=255)

                                                                                      taatAAGACGCAATTTCAAAT‑GTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTAt      <  1:3819165‑M1/87‑1 (MQ=255)

                                                                                      taatAAGACGCAATTTCAAAT‑GTGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTAt      <  2:565948‑M1/87‑1 (MQ=255)

                                                                                       ttCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATc     >  2:2119039/1‑91 (MQ=255)

                                                                                        tCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCa    <  2:3053471/91‑1 (MQ=255)

AGCTTGTAGACTAACTGAATGTCAAAATCAGCGTCTCGATAAATCAAGCTTTGTACTCTAAATAATGATTCACCATCAAAATCATGTTTCAAGACACA‑TTTGAAATTGCGTCTTATTATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTTGATTTTTATCAAT  >  USA300TCH1516_ALE/1425171‑1425351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.