| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1439018 = | 172 (0.900) | 22 (0.130) | 13/146 | NT | 11.9% | intergenic (+16/+224) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1439055 = | 168 (0.970) | intergenic (+53/+187) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1439114‑1439018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT > USA300TCH1516_ALE/1439055‑1439144 TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTT > 1:266790/1‑91TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTT > 1:266757/1‑91 CCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTC < 1:2084757/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTGCAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAGTTTTCTGTGCTTCGG < 1:3308821/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGG < 2:1291424/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 2:3746826/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:2830037/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 2:2393657/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG > 1:451412/1‑91 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 2:130913/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG > 2:3366885/1‑91 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 2:3345149/91‑1 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 1:973125/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 1:1524653/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG < 2:1633787/91‑1 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG < 2:1634596/91‑1 TTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA < 2:1961668/91‑1 TTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAA > 2:3236289/1‑91 TTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAA > 2:3236304/1‑91 TCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAA > 1:1394889/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAA > 1:2565781/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAA > 1:1158301/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAA > 1:1724888/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAA > 1:1873756/1‑91 CCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAA > 2:3755910/1‑91 CGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAG > 1:285585/1‑91 GAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGG > 1:215435/1‑91 GTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAA > 2:2182612/1‑91 TCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAG > 1:242056/1‑91 TCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAG > 1:1073208/1‑91 TCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAG > 2:2124254/1‑91 ACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAA > 1:278622/1‑91 ACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAA > 1:3647555/1‑91 ACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAA > 2:1930780/1‑91 CAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAC > 1:195326/1‑91 CAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAC > 1:59877/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 1:1151768/1‑91 CTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTA > 1:2494907/1‑91 CTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTA > 1:2494464/1‑91 CGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAA < 2:2204273/91‑1 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 2:196115/91‑1 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 2:828913/91‑1 GGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT > 2:955285/1‑91 GGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT > 2:1817269/1‑91 GGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT > 1:721331/1‑91 aaAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 2:2112498/3‑91 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA < 2:143193/91‑1 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 1:1663453/1‑91 GAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT < 2:2925950/91‑1 GAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT > 1:3508788/1‑91 AATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT < 2:1025676/91‑1 TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1439114‑1439018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT > USA300TCH1516_ALE/1439055‑1439144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |