BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1439018 =	172 (0.900)	22 (0.130)	13/146	NT	11.9%	intergenic (+16/+224)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	1439055 =	168 (0.970)	22 (0.130)	13/146	NT	11.9%	intergenic (+53/+187)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 247 total aligned reads displayed.

ATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATTT  >  USA300TCH1516_ALE/1438966‑1439145

 tCGTTTAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                          >  2:3840137/1‑91 (MQ=255)

 tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                          <  1:138057/91‑1 (MQ=255)

 tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                          <  2:6123/91‑1 (MQ=255)

  cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt                                                                                         <  2:2616540/91‑1 (MQ=255)

    ttAAGCCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                                                       <  2:3573902/91‑1 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   <  1:3760813/91‑1 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   <  2:3632029/91‑1 (MQ=255)

          cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                                 <  2:1012027/91‑1 (MQ=255)

          cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                                 <  1:938840/91‑1 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  1:1084017/1‑91 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  2:2740188/1‑91 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  1:33705/1‑91 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  1:1084087/1‑91 (MQ=255)

             cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                              <  1:1071907/91‑1 (MQ=255)

               cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                            <  2:221981/91‑1 (MQ=255)

               cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                            <  2:3530441/91‑1 (MQ=255)

               cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                            >  1:2495416/1‑91 (MQ=255)

                      aaTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGTATTATAGATGACTg                                                                     >  1:3208634/1‑91 (MQ=255)

                       aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                                    >  2:3434333/1‑91 (MQ=255)

                        tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa                                                                   <  2:77737/91‑1 (MQ=255)

                         gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                                  <  1:481714/91‑1 (MQ=255)

                             cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                              >  1:1143890/1‑91 (MQ=255)

                             cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                              >  1:695659/1‑91 (MQ=255)

                             cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                              >  2:3240209/1‑91 (MQ=255)

                              aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                             <  1:693068/91‑1 (MQ=255)

                              aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                             >  2:1930218/1‑91 (MQ=255)

                              aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                             >  2:2641485/1‑91 (MQ=255)

                              aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                             <  2:3265725/91‑1 (MQ=255)

                               aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                                                            <  2:3104598/91‑1 (MQ=255)

                                 ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                          >  1:514758/1‑91 (MQ=255)

                                 ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                          <  1:2173523/91‑1 (MQ=255)

                                   aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGTATTTTTATGCATTATAGATGACTGTAGAAAACATGCt                                                        >  1:824222/1‑91 (MQ=255)

                                   aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt                                                        <  2:2514210/91‑1 (MQ=255)

                                    aaaataatCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                                       <  1:1930218/91‑1 (MQ=255)

                                    aaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                                       <  2:1563467/91‑1 (MQ=255)

                                     aaatcaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                                      <  1:3229302/91‑1 (MQ=255)

                                     aaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAGTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                                      >  1:3085253/1‑91 (MQ=255)

                                      aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                                                     >  2:1182251/1‑91 (MQ=255)

                                       ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtttt                                                                                        >  1:2620142/1‑55 (MQ=255)

                                       ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                                                    >  2:456288/1‑91 (MQ=255)

                                        taaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGAc                                                   >  2:1055531/1‑91 (MQ=255)

                                            cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat                                               >  1:2312765/1‑91 (MQ=255)

                                              aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                             <  2:1515484/91‑1 (MQ=255)

                                              aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                             >  1:3585676/1‑91 (MQ=255)

                                              aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                             <  1:2684560/91‑1 (MQ=255)

                                              aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                             >  2:514115/1‑91 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  2:197358/1‑91 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  2:1347891/1‑91 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  1:2945447/1‑91 (MQ=255)

                                                gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                           >  1:460835/1‑91 (MQ=255)

                                                gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                           <  1:310555/91‑1 (MQ=255)

                                                   ttccccgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  2:3236289‑M2/39‑91 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  2:2475640/1‑91 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  2:960025/1‑91 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  2:960301/1‑91 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        <  1:1407941/91‑1 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  1:547396/1‑91 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  1:600634/1‑91 (MQ=255)

                                                     ccccgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      >  1:1158301‑M2/37‑91 (MQ=255)

                                                     CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      <  2:1634596‑M1/91‑1 (MQ=255)

                                                     CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      >  1:973125‑M1/1‑91 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     <  2:3746826‑M1/91‑1 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     >  2:3366885‑M1/1‑91 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     <  2:3345149‑M1/91‑1 (MQ=255)

                                                       CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa                                    <  2:1291424‑M1/91‑1 (MQ=255)

                                                        cgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg                                   >  1:285585‑M2/34‑91 (MQ=255)

                                                          AAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGa                                 >  1:266757‑M1/1‑91 (MQ=255)

                                                           gtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaa                                >  2:2182612‑M2/31‑91 (MQ=255)

                                                            tcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                               >  2:2124254‑M2/30‑91 (MQ=255)

                                                            tcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                               >  1:242056‑M2/30‑91 (MQ=255)

                                                            gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                               >  2:2978042/1‑91 (MQ=255)

                                                            gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                               <  1:2555761/91‑1 (MQ=255)

                                                             cacaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaaga                              <  2:244106/91‑1 (MQ=255)

                                                             cacaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaaga                              <  2:2534807/91‑1 (MQ=255)

                                                              acagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaagaa                             >  1:3647555‑M2/28‑91 (MQ=255)

                                                              acaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaagaa                             <  1:2073103/91‑1 (MQ=255)

                                                              acaGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaagaa                             >  2:1101482/1‑91 (MQ=255)

                                                                aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                           <  1:1466312/91‑1 (MQ=255)

                                                                  aaaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAAAATAAAAAAGGAAGAACAGc                         <  2:1084018/91‑1 (MQ=255)

                                                                    aaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcac                       <  1:1734861/91‑1 (MQ=255)

                                                                       tataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtt                    <  1:732509/91‑1 (MQ=255)

                                                                       tataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtt                    <  1:1762075/91‑1 (MQ=255)

                                                                        ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt                   >  1:2100937/1‑91 (MQ=255)

                                                                        ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt                   <  2:2309900/91‑1 (MQ=255)

                                                                        ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt                   <  2:2309314/91‑1 (MQ=255)

                                                                        ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt                   >  1:7906/1‑91 (MQ=255)

                                                                         taCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtttt                  >  1:3380801/1‑91 (MQ=255)

                                                                          aCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttttt                 >  2:435516/1‑91 (MQ=255)

                                                                           ctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta                >  1:2494464‑M2/15‑91 (MQ=255)

                                                                           cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta                <  2:3215048/91‑1 (MQ=255)

                                                                             gtgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagt              >  1:1978815/1‑91 (MQ=255)

                                                                              tgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtt             >  2:2092866/1‑91 (MQ=255)

                                                                                aCTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAATCTAAAAAAGGAAGAACAGCACATTTttagttag           <  2:1848621/91‑1 (MQ=255)

                                                                                    ggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAg       <  2:196115‑M2/86‑1 (MQ=255)

                                                                                     gggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGt      >  2:1817269‑M2/5‑91 (MQ=255)

                                                                                      ggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTa     >  1:1663453‑M2/4‑91 (MQ=255)

                                                                                      ggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTa     <  2:143193‑M2/88‑1 (MQ=255)

                                                                                       gaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAt    <  2:2925950‑M2/89‑1 (MQ=255)

                                                                                        aATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAtt   <  2:1025676‑M2/90‑1 (MQ=255)

                                                                                         aTTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAACCTAAAAAAGGAAGAACAGCACATTTATAGTTAGAAAGtatct  >  2:1619102/1‑89 (MQ=255)

ATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATTT  >  USA300TCH1516_ALE/1438966‑1439145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.