| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1439018 = | 172 (0.900) | 22 (0.130) | 13/146 | NT | 11.9% | intergenic (+16/+224) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1439055 = | 168 (0.970) | intergenic (+53/+187) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
Only 100 of 294 total aligned reads displayed.
TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAA > USA300TCH1516_ALE/1438928‑1439108 | tAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATC > 1:262378‑M1/1‑91 (MQ=255) tAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATC < 1:1201804‑M1/91‑1 (MQ=255) atactttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTc < 2:2925950‑M1/2‑1 (MQ=255) tactttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTcc < 2:143193‑M1/3‑1 (MQ=255) aaaaGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCC > 2:1695655‑M1/1‑91 (MQ=255) actttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTccc > 1:721331‑M1/88‑91 (MQ=255) ctttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTcccc < 2:828913‑M1/5‑1 (MQ=255) ctttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTcccc < 2:196115‑M1/5‑1 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 2:2346068/1‑91 (MQ=255) gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca < 1:1029320/91‑1 (MQ=255) gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca > 2:1524653/1‑91 (MQ=255) aaaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcaca > 2:2567603/1‑91 (MQ=255) taaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAg > 1:2494907‑M1/78‑91 (MQ=255) aaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAg < 2:149949/91‑1 (MQ=255) aaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAg > 1:2460005/1‑91 (MQ=255) gCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaa < 1:3848463/91‑1 (MQ=255) cACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaa > 1:3861105/1‑91 (MQ=255) aCGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGaaaa < 1:2915812/91‑1 (MQ=255) gTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAtt > 2:3506216/1‑91 (MQ=255) tGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATta < 1:2231705/91‑1 (MQ=255) gTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACt > 1:3104598/1‑91 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATCATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtg < 1:2869835/91‑1 (MQ=255) ttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACtgt > 1:278622‑M1/65‑91 (MQ=255) ttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACtgt > 1:3647555‑M1/65‑91 (MQ=255) tataAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgt < 1:2676506‑M1/91‑21 (MQ=255) tataAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtgt > 2:3798215/1‑91 (MQ=255) ataAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtg < 1:329086‑M1/91‑22 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAGCAAAGTAATCCCCGAgtcacagtataattttctgtgc < 2:771166‑M1/91‑23 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgc < 2:246857‑M1/91‑23 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgc < 1:1549136‑M1/91‑23 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgc < 2:54833‑M1/91‑23 (MQ=255) cttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGa > 2:2124254‑M1/63‑91 (MQ=255) ttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGAc > 2:2182612‑M1/62‑91 (MQ=255) aaGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACt < 2:1938687‑M2/91‑2 (MQ=255) aGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtc < 2:3307994‑M2/91‑3 (MQ=255) aGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtc > 1:1435689‑M2/1‑89 (MQ=255) gCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgcttcg < 1:2137349‑M1/91‑27 (MQ=255) cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgcttcgg < 2:2536796‑M1/91‑28 (MQ=255) cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg > 2:972975‑M2/1‑87 (MQ=255) tttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCggg > 1:1873756‑M1/57‑91 (MQ=255) gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg > 1:1014690‑M2/1‑86 (MQ=255) gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg > 2:1792448‑M2/1‑86 (MQ=255) ttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCgggg > 1:1724888‑M1/56‑91 (MQ=255) ttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCgggg > 1:2565781‑M1/56‑91 (MQ=255) aCAATCGTTAAGACAACTCATTATTGATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggg > 1:3609760‑M2/1‑85 (MQ=255) aCAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggg < 1:1976136‑M2/91‑7 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga < 1:3551075‑M2/91‑8 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga < 1:2534807‑M2/91‑8 (MQ=255) ttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGaa > 2:3236304‑M1/54‑91 (MQ=255) aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt > 2:2644894/1‑91 (MQ=255) aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt < 2:2529424/91‑1 (MQ=255) cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt < 2:2616540/91‑1 (MQ=255) ttAAGCCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt < 2:3573902/91‑1 (MQ=255) ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt > 2:451412/1‑91 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt < 2:500638/91‑1 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt < 1:1335988/91‑1 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt > 2:312474/1‑91 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt < 1:243631/91‑1 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 2:3632029/91‑1 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 1:964547/91‑1 (MQ=255) cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgcttcggggattactttgttta < 1:2374414‑M1/91‑43 (MQ=255) cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt > 1:3215048/1‑91 (MQ=255) cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt < 2:1012028/91‑1 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta > 1:1084017/1‑91 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta > 2:2740188/1‑91 (MQ=255) cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat > 1:513663/1‑91 (MQ=255) cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat > 2:644859/1‑91 (MQ=255) tattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTCTTATGCATTATAGATg > 2:3705663/1‑91 (MQ=255) aaTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTg > 1:3373662/1‑91 (MQ=255) aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt > 2:3434333/1‑91 (MQ=255) gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg < 2:2235607/91‑1 (MQ=255) gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg < 1:481453/91‑1 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 2:18195/91‑1 (MQ=255) cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGcaaa > 1:3493733/1‑91 (MQ=255) cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa > 2:3240209/1‑91 (MQ=255) cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa > 1:1143890/1‑91 (MQ=255) aaaatgaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc < 2:2067815/91‑1 (MQ=255) aaaataaaaataAACAAAGTAATCCCCGAAGCACAGGAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc < 1:1122512/91‑1 (MQ=255) aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc < 1:692814/91‑1 (MQ=255) aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt > 1:3196679/1‑91 (MQ=255) ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg < 1:2173523/91‑1 (MQ=255) aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt < 2:2512312/91‑1 (MQ=255) aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt > 2:1564975/1‑91 (MQ=255) aaaataatCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt < 1:1930218/91‑1 (MQ=255) aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg > 2:1182251/1‑91 (MQ=255) taaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGAc > 2:1055531/1‑91 (MQ=255) aaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACa < 1:833385/91‑1 (MQ=255) cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat > 1:694137/1‑91 (MQ=255) cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat > 1:2312765/1‑91 (MQ=255) aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc > 1:3585676/1‑91 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 2:1347891/1‑91 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 1:2945447/1‑91 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacg < 1:629454‑M2/91‑58 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc < 1:780376/91‑1 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa < 1:1407941/91‑1 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:547396/1‑91 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:600634/1‑91 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 2:960259/1‑91 (MQ=255) tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg > 1:435254‑M1/1‑7 (MQ=255) tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg < 1:3550810‑M1/91‑85 (MQ=255) | TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAA > USA300TCH1516_ALE/1438928‑1439108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |