| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1442468 | 193 (1.010) | 14 (0.080) | 9/148 | NT | 7.2% | coding (838/1137 nt) | USA300HOU_RS07165 | TelA‑like protein |
| ? | USA300TCH1516_ALE | = 1442491 | 182 (1.030) | coding (861/1137 nt) | USA300HOU_RS07165 | TelA‑like protein | |||||
ATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1442373‑1442468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacagcTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATTGA < USA300TCH1516_ALE/1442491‑1442402 ATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAG > 2:10505/1‑91ATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAG > 2:1844024/1‑91ATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAG > 1:1643830/1‑91 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC < 2:2410299/91‑1 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC > 2:1305663/1‑91 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC > 2:1574795/1‑91 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC < 2:1735613/91‑1 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC < 1:2653299/91‑1 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC < 2:2080056/91‑1 CAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAC > 1:2041140/1‑91 AAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACA < 2:3673670/91‑1 AGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAG < 2:2687008/91‑1 AGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAG > 1:2310992/1‑91 AGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAG > 1:2311118/1‑91 AGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAG < 1:1575790/91‑1 GCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAcc > 2:3536218/1‑89 GCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC > 2:2741660/1‑91 GCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC > 2:220228/1‑91 GCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC > 2:3065961/1‑91 GCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC > 1:3193181/1‑91 AAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGC < 1:2349066/91‑1 ATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAAC < 2:714978/91‑1 AAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCA < 2:863401/91‑1 AAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCA < 2:3557574/91‑1 AAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCA < 2:3557876/91‑1 TTCAATTTTGACAAGTATTCCACTATGGAAAAAGCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTAC < 1:3439240/91‑1 TCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACG < 2:601694/91‑1 AATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACGCT < 1:1502721/91‑1 AATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACGCT < 1:1502234/91‑1 TTTTGACAAGTCTTCCACTATGGTAAAATCAAATGGCCATTGCGCTTACATTAATGAGAGAGCTCGTTGTGCAGCAACTGCATTACGCTGT < 2:2958540/91‑1 TTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGAGAGCTCGTTGTGCAGCAACTGCATTACGCTGT < 2:2958960/91‑1 CAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATT < 1:1759142/91‑1 CAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATT < 1:3456267/91‑1 ATTAATGAGACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATAC < 2:1253216/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA > 1:2656354/1‑91 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 1:2596213/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 1:1201368/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 2:571866/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 1:2596774/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 2:1784128/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA > 1:2656920/1‑91 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA > 2:1263870/1‑91 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 1:1201344/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA > 1:686581/1‑91 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAA < 1:528057/91‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCA < 2:205167/88‑1 ACAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCA > 1:205167/1‑88 CAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAAT < 1:1158680/91‑1 CAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAAT < 1:3706886/91‑1 CAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAAT > 2:2701660/1‑91 CAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAAT > 1:816195/1‑91 CAGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAAT < 1:3835703/91‑1 AGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATT < 2:2275627/91‑1 AGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATT > 2:2174194/1‑91 AGCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATT < 2:2132178/91‑1 AGCTCGTAGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAATCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATT < 1:1939948/91‑1 AGCTCGTAGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATT < 1:1939921/91‑1 GCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATTG > 2:256393/1‑91 GCTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATTG > 1:2272146/1‑91 CTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATTGA < 1:3390169/91‑1 ATCAAGCACTTGCCGAGAAGATACAAAGTTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1442373‑1442468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacagcTCGTTGTGCAGCAACTGCATTACGCTGTCTCATTAATGTAAGCGCAATGGCCATTTGATTTTTCCATAGTGGAATACTTGTCAAAATTGA < USA300TCH1516_ALE/1442491‑1442402 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |