BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1442468	193 (1.010)	14 (0.080)	9/148	NT	7.2%	coding (838/1137 nt)	USA300HOU_RS07165	TelA‑like protein
*	?	USA300TCH1516_ALE	= 1442491	182 (1.030)	14 (0.080)	9/148	NT	7.2%	coding (861/1137 nt)	USA300HOU_RS07165	TelA‑like protein

Only 100 of 247 total aligned reads displayed.

TTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCGT  >  USA300TCH1516_ALE/1442401‑1442581

ttCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGa                                                                                            <  2:2310992/91‑1 (MQ=255)

 tCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAg                                                                                           <  1:3390169‑M2/91‑2 (MQ=255)

   aaTTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgct                                                                                         <  2:2275627‑M2/91‑4 (MQ=255)

   aaTTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgct                                                                                         >  2:2174194‑M2/1‑88 (MQ=255)

   aaTTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGATTACATTAATGAGACAGCGTAATGCAGTTGCTGCACTACGAgct                                                                                         <  1:1939948‑M2/91‑4 (MQ=255)

    aTTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctg                                                                                        >  2:2701660‑M2/1‑87 (MQ=255)

    aTTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctg                                                                                        >  1:816195‑M2/1‑87 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       >  2:1263870‑M2/1‑86 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       <  1:2596774‑M2/91‑6 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       <  1:528057‑M2/91‑6 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       >  1:686581‑M2/1‑86 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       <  2:1784128‑M2/91‑6 (MQ=255)

     ttttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAgctgt                                                                                       <  1:1201368‑M2/91‑6 (MQ=255)

       ttGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCa                                                                                     <  2:1016140/91‑1 (MQ=255)

         gACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACt                                                                                   >  2:3239797/1‑91 (MQ=255)

           cAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGa                                                                                 <  1:3539906/91‑1 (MQ=255)

            aaGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGAt                                                                                <  1:2761821/91‑1 (MQ=255)

             aGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATa                                                                               >  2:570567/1‑91 (MQ=255)

             aGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATa                                                                               >  2:570565/1‑91 (MQ=255)

              gTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATAc                                                                              >  2:3299366/1‑91 (MQ=255)

              gTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATAc                                                                              >  2:3318739/1‑91 (MQ=255)

               tATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACa                                                                             <  2:645520/91‑1 (MQ=255)

                aTTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACaa                                                                            <  1:1236142/91‑1 (MQ=255)

                 ttCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAAc                                                                           <  1:1816372/91‑1 (MQ=255)

                  tCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGACACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACt                                                                          <  1:3086591/91‑1 (MQ=255)

                  tCCACTATGGAAAAATCAAATGGCCATTGCGCCTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACt                                                                          >  2:3808816/1‑91 (MQ=255)

                   ccACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTa                                                                         >  1:3044821/1‑91 (MQ=255)

                    cACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTaa                                                                        <  1:551926/91‑1 (MQ=255)

                    cACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTaa                                                                        >  1:1420511/1‑91 (MQ=255)

                     aCTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGTGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAAt                                                                       >  2:77018/1‑91 (MQ=255)

                     aCTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAAt                                                                       >  2:590129/1‑91 (MQ=255)

                      cTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATg                                                                      <  1:3798067/91‑1 (MQ=255)

                      cTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATg                                                                      >  2:3867367/1‑91 (MQ=255)

                      cTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATg                                                                      <  2:3849493/91‑1 (MQ=255)

                       tATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGa                                                                     <  1:2085593/91‑1 (MQ=255)

                       tATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGa                                                                     >  2:2892470/1‑91 (MQ=255)

                       tATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGa                                                                     >  2:3028696/1‑91 (MQ=255)

                       tATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGa                                                                     <  1:3718751/91‑1 (MQ=255)

                        aTGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGAt                                                                    <  1:2320081/91‑1 (MQ=255)

                        aTGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGAt                                                                    <  2:2784603/91‑1 (MQ=255)

                           gAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATtta                                                                 <  1:202377/91‑1 (MQ=255)

                             aaaaTCAGATGGCCATTGCGCTTACATTAATGAGACCGCGAAATGCACTTGCTGCACAACGAGCTGGCACTGATACAACTAATGATttatt                                                               >  2:3611213/1‑91 (MQ=255)

                             aaaaTCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATttatt                                                               >  1:104469/1‑91 (MQ=255)

                             aaaaTCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATttatt                                                               >  2:1448037/1‑91 (MQ=255)

                                  cAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAg                                                          >  1:608762/1‑91 (MQ=255)

                                    aaTGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCa                                                        >  2:2804550/1‑91 (MQ=255)

                                     aTGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCaa                                                       >  2:3341867/1‑91 (MQ=255)

                                      tGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCaaa                                                      >  1:3541511/1‑91 (MQ=255)

                                      tGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCaaa                                                      <  1:3433576/91‑1 (MQ=255)

                                      tGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCaaa                                                      >  1:1587330/1‑91 (MQ=255)

                                      tGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCaaa                                                      <  1:1322918/91‑1 (MQ=255)

                                        gCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATg                                                    <  2:3636693/91‑1 (MQ=255)

                                        gCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATg                                                    <  1:1694911/91‑1 (MQ=255)

                                         ccATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGc                                                   <  2:2597552/91‑1 (MQ=255)

                                         ccATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGc                                                   <  1:392018/91‑1 (MQ=255)

                                          cATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCt                                                  >  2:241744/1‑91 (MQ=255)

                                          cATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCt                                                  <  1:1164084/91‑1 (MQ=255)

                                           aTTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTg                                                 >  1:2452228/1‑91 (MQ=255)

                                            ttGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGa                                                >  2:3243997/1‑91 (MQ=255)

                                             tGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGaa                                               <  2:1108674/91‑1 (MQ=255)

                                              gcgcTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGaaa                                              >  2:2478835/1‑91 (MQ=255)

                                                 cTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGt                                           >  2:3086915/1‑91 (MQ=255)

                                                 cTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGt                                           <  1:1977978/91‑1 (MQ=255)

                                                       ttAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAAc                                     >  2:1490471/1‑91 (MQ=255)

                                                         aaTGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACaa                                   <  2:511813/91‑1 (MQ=255)

                                                         aaTGAGACAGCGTAAAGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATGTATTAACAGCAAATGCTGAAATGTTGAAACaa                                   >  1:3311262/1‑91 (MQ=255)

                                                           tGAGACAGCGTAATGCAGTTGCTGCATAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACaaaa                                 >  2:2208695/1‑91 (MQ=255)

                                                             agaCAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATg                               >  1:1502870/1‑91 (MQ=255)

                                                             agaCAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATg                               >  2:3757511/1‑91 (MQ=255)

                                                               aCAGCGTAATGCAGTTGCTGCACAACGAgctctctcattaatgtaagcgcaatggccatttgatttttccatagtggaatacttgtcaaaa                             <  2:2958960‑M2/91‑64 (MQ=255)

                                                                cAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGa                            <  1:91212/91‑1 (MQ=255)

                                                                 aGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGAt                           <  2:2653454/91‑1 (MQ=255)

                                                                  gCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGCAATGTTGACACAAAATGCGAtt                          >  2:3132095/1‑91 (MQ=255)

                                                                   cGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTg                         <  2:1319696/91‑1 (MQ=255)

                                                                    gTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGa                        <  1:2264566/91‑1 (MQ=255)

                                                                     tAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGaa                       <  1:2128933/91‑1 (MQ=255)

                                                                      aaTGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGaaa                      <  1:1907196/91‑1 (MQ=255)

                                                                       aTGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAAc                     >  2:1208485/1‑91 (MQ=255)

                                                                       aTGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAAc                     <  2:471783/91‑1 (MQ=255)

                                                                        tGCAGTTGCTGCACAACGAgctgtctcattaatgtaagcgcaatggccatttgatttttccatagtggaatacttgtcaaaattgaacttt                    <  2:3557876‑M2/91‑73 (MQ=255)

                                                                        tGCAGTTGCTGCACAACGAgctgtctcattaatgtaagcgcaatggccatttgatttttccatagtggaatacttgtcaaaattgaacttt                    <  2:863401‑M2/91‑73 (MQ=255)

                                                                        tGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACt                    <  1:3267850/91‑1 (MQ=255)

                                                                          cAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGc                  <  2:2512767/91‑1 (MQ=255)

                                                                            gTTGCTGCACAACGAgctgtctcattaatgtaagcgcaatggccatttgatttttccatagtggaatacttgtcaaaattgaactttgtat                <  2:714978‑M2/91‑77 (MQ=255)

                                                                            gTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCaa                >  1:1793637/1‑91 (MQ=255)

                                                                               gctgcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAg             >  1:2594669/1‑91 (MQ=255)

                                                                                ctgcACAACGAGCTGTCACTGATACAACTAATGCTTTATTACCAGCAAATGCTGACATGTTGAAACAAAATGCGATTGAAACTGCAACAGa            >  2:2077576/1‑91 (MQ=255)

                                                                                ctgcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGa            >  2:2077646/1‑91 (MQ=255)

                                                                                ctgcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGa            >  2:2025310/1‑91 (MQ=255)

                                                                                 tgcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGaa           <  2:3160120/91‑1 (MQ=255)

                                                                                  gcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGaaa          >  2:1246851/1‑91 (MQ=255)

                                                                                  gcACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGaaa          <  1:2463691/91‑1 (MQ=255)

                                                                                    acaACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAAt        <  1:3217669/91‑1 (MQ=255)

                                                                                    acaACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAAt        <  1:2698400/91‑1 (MQ=255)

                                                                                     caACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATg       <  1:1709722/91‑1 (MQ=255)

                                                                                      aaCGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGa      >  1:1927407/1‑91 (MQ=255)

                                                                                        cGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGc    >  2:2585217/1‑91 (MQ=255)

                                                                                         gAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCg   >  2:338308/1‑91 (MQ=255)

                                                                                          aGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCGt  >  2:893904/1‑91 (MQ=255)

                                                                                          aGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCGt  >  1:1157839/1‑91 (MQ=255)

TTCAATTTTGACAAGTATTCCACTATGGAAAAATCAAATGGCCATTGCGCTTACATTAATGAGACAGCGTAATGCAGTTGCTGCACAACGAGCTGTCACTGATACAACTAATGATTTATTAACAGCAAATGCTGAAATGTTGAAACAAAATGCGATTGAAACTGCAACAGAAAATGAGCGT  >  USA300TCH1516_ALE/1442401‑1442581

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.